miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 5' -57.7 NC_001875.2 + 10720 0.66 0.824739
Target:  5'- -----gGUGCCGCUGcuaGUCUUGUCGGa -3'
miRNA:   3'- agaacgUACGGCGGC---CGGAACAGCCg -5'
6765 5' -57.7 NC_001875.2 + 79841 0.66 0.824739
Target:  5'- --cUGCGUGCUcaGCUGGCUaaugUUGgggUGGCg -3'
miRNA:   3'- agaACGUACGG--CGGCCGG----AACa--GCCG- -5'
6765 5' -57.7 NC_001875.2 + 85667 0.66 0.824739
Target:  5'- -aUUGUggGCgCGCCGGCCUg--CaGCg -3'
miRNA:   3'- agAACGuaCG-GCGGCCGGAacaGcCG- -5'
6765 5' -57.7 NC_001875.2 + 101173 0.66 0.816145
Target:  5'- ---cGCGUGgCGCUGGUCaauuacgUGcCGGCg -3'
miRNA:   3'- agaaCGUACgGCGGCCGGa------ACaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 29264 0.66 0.816145
Target:  5'- --gUGCGcgGCCGCCGaCCgcGcCGGCg -3'
miRNA:   3'- agaACGUa-CGGCGGCcGGaaCaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 438 0.66 0.816145
Target:  5'- cUCgaGCGUGCCGUCGuGCac---CGGCg -3'
miRNA:   3'- -AGaaCGUACGGCGGC-CGgaacaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 12673 0.66 0.807384
Target:  5'- ---cGCGcGCCGCguUGGCCgggUGUggCGGCa -3'
miRNA:   3'- agaaCGUaCGGCG--GCCGGa--ACA--GCCG- -5'
6765 5' -57.7 NC_001875.2 + 1739 0.66 0.807384
Target:  5'- ---cGCGccGCCGCCGccGCCauuuccGUCGGCg -3'
miRNA:   3'- agaaCGUa-CGGCGGC--CGGaa----CAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 37595 0.66 0.807384
Target:  5'- ---aGCGccGCgGCCGGCCgcacggCGGCg -3'
miRNA:   3'- agaaCGUa-CGgCGGCCGGaaca--GCCG- -5'
6765 5' -57.7 NC_001875.2 + 1830 0.66 0.807384
Target:  5'- ---aGCAUGCCGCCGccGCCgccaaUGGUa -3'
miRNA:   3'- agaaCGUACGGCGGC--CGGaaca-GCCG- -5'
6765 5' -57.7 NC_001875.2 + 51765 0.66 0.807384
Target:  5'- --gUGCAaggUGCCGCCaaaGGCgUUGggcgaGGCg -3'
miRNA:   3'- agaACGU---ACGGCGG---CCGgAACag---CCG- -5'
6765 5' -57.7 NC_001875.2 + 107405 0.66 0.798463
Target:  5'- --gUGCGUcaacGCCGCCcuGCUUUGUgGGUg -3'
miRNA:   3'- agaACGUA----CGGCGGc-CGGAACAgCCG- -5'
6765 5' -57.7 NC_001875.2 + 77262 0.66 0.798463
Target:  5'- ---gGCGcGCCGCCGGgCgaagCGGCc -3'
miRNA:   3'- agaaCGUaCGGCGGCCgGaacaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 102987 0.66 0.798463
Target:  5'- cUCUaGCggcgacaaGUGcCCGCCGuCCgUGUCGGCc -3'
miRNA:   3'- -AGAaCG--------UAC-GGCGGCcGGaACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 21028 0.66 0.798463
Target:  5'- gUCUcUGCugguccacggGCaCGCCuuCCUUGUCGGCg -3'
miRNA:   3'- -AGA-ACGua--------CG-GCGGccGGAACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 38538 0.66 0.798463
Target:  5'- uUUUUGCAgcucGUgGCCGGgUUgcugcGUCGGCg -3'
miRNA:   3'- -AGAACGUa---CGgCGGCCgGAa----CAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 89349 0.66 0.798463
Target:  5'- --aUGCAcucGUCGuuGGCUUcGUCGGUa -3'
miRNA:   3'- agaACGUa--CGGCggCCGGAaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 91685 0.66 0.789392
Target:  5'- ---cGCAUcgcGuuGCCGGCCgUG-CGGUg -3'
miRNA:   3'- agaaCGUA---CggCGGCCGGaACaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 13643 0.66 0.788476
Target:  5'- -gUUGCcgcGCCGCCGcucaacacaaacaGCCcacuuUUGUCGGCc -3'
miRNA:   3'- agAACGua-CGGCGGC-------------CGG-----AACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 3810 0.67 0.742082
Target:  5'- ---aGCGUcGaCCaCCGGCCgucGUCGGCg -3'
miRNA:   3'- agaaCGUA-C-GGcGGCCGGaa-CAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.