miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6766 5' -51.8 NC_001875.2 + 82099 0.66 0.989375
Target:  5'- ---gGCCGcaccagcGACUaCGGCGACGUGGa -3'
miRNA:   3'- cuuaCGGCcuu----UUGG-GCUGCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 86680 0.66 0.989237
Target:  5'- cGGUGCUGGAGAcguACCUGgccaguaGCGGCaaGUGGc -3'
miRNA:   3'- cUUACGGCCUUU---UGGGC-------UGCUG--CACC- -5'
6766 5' -51.8 NC_001875.2 + 86251 0.66 0.987929
Target:  5'- ---cGCCGGAGucgGGCCCGcuggacuugGCGGCGa-- -3'
miRNA:   3'- cuuaCGGCCUU---UUGGGC---------UGCUGCacc -5'
6766 5' -51.8 NC_001875.2 + 43987 0.66 0.986334
Target:  5'- cGAccGCCacGGAcAGCCCGACGGgcgcCGUGc -3'
miRNA:   3'- -CUuaCGG--CCUuUUGGGCUGCU----GCACc -5'
6766 5' -51.8 NC_001875.2 + 62400 0.66 0.986334
Target:  5'- ---gGCCGGcgcgcAAACgCCGGCGucaagcacuucGCGUGGa -3'
miRNA:   3'- cuuaCGGCCu----UUUG-GGCUGC-----------UGCACC- -5'
6766 5' -51.8 NC_001875.2 + 54576 0.66 0.986334
Target:  5'- cGGcgGCCGcuucGCCCGGCGGCGc-- -3'
miRNA:   3'- -CUuaCGGCcuuuUGGGCUGCUGCacc -5'
6766 5' -51.8 NC_001875.2 + 333 0.66 0.986166
Target:  5'- cGGAUGCCGGcccccgguuagGAGuuuguaggcuagcACgCCGACGGCGUa- -3'
miRNA:   3'- -CUUACGGCC-----------UUU-------------UG-GGCUGCUGCAcc -5'
6766 5' -51.8 NC_001875.2 + 111092 0.66 0.984583
Target:  5'- ---cGCCGuGAAAACCUuuuguuGCGGCGUGc -3'
miRNA:   3'- cuuaCGGC-CUUUUGGGc-----UGCUGCACc -5'
6766 5' -51.8 NC_001875.2 + 108874 0.66 0.982665
Target:  5'- ---cGCUGGAAAGCgCGGCGgagGCGUa- -3'
miRNA:   3'- cuuaCGGCCUUUUGgGCUGC---UGCAcc -5'
6766 5' -51.8 NC_001875.2 + 40450 0.66 0.982665
Target:  5'- aGAAcGUgGGcAGcCCCGAgGGCGUGGu -3'
miRNA:   3'- -CUUaCGgCCuUUuGGGCUgCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 33212 0.66 0.982665
Target:  5'- ---cGCCGGGGAaaaaacACgCGGgcucCGACGUGGc -3'
miRNA:   3'- cuuaCGGCCUUU------UGgGCU----GCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 32806 0.66 0.980574
Target:  5'- ---cGCCGGcAAGCUCGGCGaACGg-- -3'
miRNA:   3'- cuuaCGGCCuUUUGGGCUGC-UGCacc -5'
6766 5' -51.8 NC_001875.2 + 28647 0.67 0.9783
Target:  5'- -cGUGUCGuGGAACguguggaaCGGCGGCGUGGg -3'
miRNA:   3'- cuUACGGCcUUUUGg-------GCUGCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 12914 0.67 0.975834
Target:  5'- ---cGCCGG----CCCGugGAUGUGc -3'
miRNA:   3'- cuuaCGGCCuuuuGGGCugCUGCACc -5'
6766 5' -51.8 NC_001875.2 + 90679 0.67 0.975834
Target:  5'- --uUGCugCGGAuGACCuCGACGAUG-GGg -3'
miRNA:   3'- cuuACG--GCCUuUUGG-GCUGCUGCaCC- -5'
6766 5' -51.8 NC_001875.2 + 123337 0.67 0.975834
Target:  5'- cAGUGCgcggcgcccacaCGGAcggcGCCCGGCGugGUGu -3'
miRNA:   3'- cUUACG------------GCCUuu--UGGGCUGCugCACc -5'
6766 5' -51.8 NC_001875.2 + 105885 0.67 0.97317
Target:  5'- ---aGUCGGugcaguACCCGAUGGCG-GGc -3'
miRNA:   3'- cuuaCGGCCuuu---UGGGCUGCUGCaCC- -5'
6766 5' -51.8 NC_001875.2 + 33531 0.67 0.9703
Target:  5'- --uUGCCGGGcgAAACCaCcACGGCGUcGGu -3'
miRNA:   3'- cuuACGGCCU--UUUGG-GcUGCUGCA-CC- -5'
6766 5' -51.8 NC_001875.2 + 85345 0.67 0.9703
Target:  5'- ---cGCCGc-GAACgCCGACGcCGUGGc -3'
miRNA:   3'- cuuaCGGCcuUUUG-GGCUGCuGCACC- -5'
6766 5' -51.8 NC_001875.2 + 61571 0.67 0.9703
Target:  5'- aGGUGCUGaGu---UCCGACGAgGUGGa -3'
miRNA:   3'- cUUACGGC-CuuuuGGGCUGCUgCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.