miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6767 3' -52.3 NC_001875.2 + 104669 0.65 0.977834
Target:  5'- gGCGUugagcucgcccuugGCCA-UGUCGGCAAuguCGcuaAGGCu -3'
miRNA:   3'- aCGCG--------------CGGUaACAGCCGUUu--GC---UUCG- -5'
6767 3' -52.3 NC_001875.2 + 16208 0.65 0.977589
Target:  5'- cGUGCgGCCcgUGUUugagucgGGCGagugugacugcggcGACGAGGCc -3'
miRNA:   3'- aCGCG-CGGuaACAG-------CCGU--------------UUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 68038 0.66 0.964048
Target:  5'- cUGCGCGCCAaag-CGGUuuGCGGc-- -3'
miRNA:   3'- -ACGCGCGGUaacaGCCGuuUGCUucg -5'
6767 3' -52.3 NC_001875.2 + 83597 0.66 0.9705
Target:  5'- cGCGCGCCuuAUUcaCGGUGuuCGgcGCg -3'
miRNA:   3'- aCGCGCGG--UAAcaGCCGUuuGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 74651 0.66 0.964048
Target:  5'- aGCGUGCCAUgGcCGGgGcugGGCG-AGCu -3'
miRNA:   3'- aCGCGCGGUAaCaGCCgU---UUGCuUCG- -5'
6767 3' -52.3 NC_001875.2 + 111463 0.66 0.9705
Target:  5'- cGgGCGCCcuucaaaUCGGCGGACaaGAGGUg -3'
miRNA:   3'- aCgCGCGGuaac---AGCCGUUUG--CUUCG- -5'
6767 3' -52.3 NC_001875.2 + 102805 0.66 0.976078
Target:  5'- aGCGCGUCGUUuagcccGUCGccgccGCAaaucggGAUGAAGCc -3'
miRNA:   3'- aCGCGCGGUAA------CAGC-----CGU------UUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 442 0.66 0.9705
Target:  5'- aGCGUGCCGUcGUgcacCGGCGAGUGuucGCg -3'
miRNA:   3'- aCGCGCGGUAaCA----GCCGUUUGCuu-CG- -5'
6767 3' -52.3 NC_001875.2 + 42456 0.66 0.976078
Target:  5'- aGCG-GCCGcUG-CGGCGAgccACGcAGCa -3'
miRNA:   3'- aCGCgCGGUaACaGCCGUU---UGCuUCG- -5'
6767 3' -52.3 NC_001875.2 + 6197 0.66 0.9705
Target:  5'- cGCGCGCCGUUucaaagCGcGCAAuuGCGuccgucGGCg -3'
miRNA:   3'- aCGCGCGGUAAca----GC-CGUU--UGCu-----UCG- -5'
6767 3' -52.3 NC_001875.2 + 10399 0.66 0.967387
Target:  5'- cGcCGCGCCGUggcgCGGCAccCGcuGCa -3'
miRNA:   3'- aC-GCGCGGUAaca-GCCGUuuGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 88249 0.66 0.976078
Target:  5'- cGCGCGCCGccGcugccgccguacUCGuCAGACGAAGa -3'
miRNA:   3'- aCGCGCGGUaaC------------AGCcGUUUGCUUCg -5'
6767 3' -52.3 NC_001875.2 + 99958 0.66 0.962648
Target:  5'- -aCGCGCUGgugaaccacggacUGUUGGCcacaGAGCGGAGCg -3'
miRNA:   3'- acGCGCGGUa------------ACAGCCG----UUUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 97998 0.66 0.9705
Target:  5'- gGUGCGCgAcgUGUUGuuuGACGAGGCg -3'
miRNA:   3'- aCGCGCGgUa-ACAGCcguUUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 50371 0.66 0.967387
Target:  5'- cGCGCGCCAcUGaCcGCGGACc-AGCg -3'
miRNA:   3'- aCGCGCGGUaACaGcCGUUUGcuUCG- -5'
6767 3' -52.3 NC_001875.2 + 71917 0.66 0.967387
Target:  5'- gGCGUGCgc--GUCGGCGAGCGccuugaccGCg -3'
miRNA:   3'- aCGCGCGguaaCAGCCGUUUGCuu------CG- -5'
6767 3' -52.3 NC_001875.2 + 116904 0.66 0.9705
Target:  5'- cUGCGCuaGCCGcgcgCGGCGggUGgcGCa -3'
miRNA:   3'- -ACGCG--CGGUaacaGCCGUuuGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 33499 0.66 0.976078
Target:  5'- gGUGCGCCAaccgaUUGUacacgcagcgCGGCuuGCcGGGCg -3'
miRNA:   3'- aCGCGCGGU-----AACA----------GCCGuuUGcUUCG- -5'
6767 3' -52.3 NC_001875.2 + 13551 0.66 0.966738
Target:  5'- aGCGCGCCAgcugcagccacucUUGcgUGGCGuuguaguaaucaaAGuCGAGGCa -3'
miRNA:   3'- aCGCGCGGU-------------AACa-GCCGU-------------UU-GCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 63697 0.66 0.970199
Target:  5'- aGCGUucGCCGaugcgguUUGUCGGUcgcGGCGAcGGCg -3'
miRNA:   3'- aCGCG--CGGU-------AACAGCCGu--UUGCU-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.