miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6767 3' -52.3 NC_001875.2 + 92217 1.13 0.002884
Target:  5'- cUGCGCGCCAUUGUCGGCAAACGAAGCg -3'
miRNA:   3'- -ACGCGCGGUAACAGCCGUUUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 92553 0.84 0.218869
Target:  5'- aGCGCGCacuuggUGUCGGCGGGCaGAAGCc -3'
miRNA:   3'- aCGCGCGgua---ACAGCCGUUUG-CUUCG- -5'
6767 3' -52.3 NC_001875.2 + 72710 0.81 0.307152
Target:  5'- gUGCGCGCCGUUaauugcgcuugcgcGUCGGCcAGCGAcGCc -3'
miRNA:   3'- -ACGCGCGGUAA--------------CAGCCGuUUGCUuCG- -5'
6767 3' -52.3 NC_001875.2 + 11187 0.81 0.3244
Target:  5'- uUGCGCGCCGUUGUgGaGCAcGACGccGCg -3'
miRNA:   3'- -ACGCGCGGUAACAgC-CGU-UUGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 113580 0.8 0.356086
Target:  5'- gGCGCGCCAUUGggccagcaCGGCGuuCGAgucGGCg -3'
miRNA:   3'- aCGCGCGGUAACa-------GCCGUuuGCU---UCG- -5'
6767 3' -52.3 NC_001875.2 + 90444 0.79 0.407557
Target:  5'- cGCGCGCgCAgaggcGUCGGUggGCGgcGCg -3'
miRNA:   3'- aCGCGCG-GUaa---CAGCCGuuUGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 128906 0.77 0.473143
Target:  5'- aGCGCGCCAgcgcgCGGUGAauuugcACGAGGCg -3'
miRNA:   3'- aCGCGCGGUaaca-GCCGUU------UGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 23825 0.77 0.482946
Target:  5'- gGCGCGCCG-UGUCucuGGCGggUGggGUu -3'
miRNA:   3'- aCGCGCGGUaACAG---CCGUuuGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 28786 0.77 0.492846
Target:  5'- aUGCGCaCCGcuUUGUcuaacugaccgCGGCAAACGggGCa -3'
miRNA:   3'- -ACGCGcGGU--AACA-----------GCCGUUUGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 69894 0.76 0.533318
Target:  5'- gGCGCGCCg--GUCGaCAAACGcGGCg -3'
miRNA:   3'- aCGCGCGGuaaCAGCcGUUUGCuUCG- -5'
6767 3' -52.3 NC_001875.2 + 114581 0.76 0.533318
Target:  5'- uUGUGCGC----GUCGGCAAACGcGGCg -3'
miRNA:   3'- -ACGCGCGguaaCAGCCGUUUGCuUCG- -5'
6767 3' -52.3 NC_001875.2 + 99414 0.76 0.543627
Target:  5'- cGCGCaGCgCAUUGUUGGCcAGCGccGCg -3'
miRNA:   3'- aCGCG-CG-GUAACAGCCGuUUGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 73595 0.76 0.564431
Target:  5'- --aGCGCCAUUuucugCGGCGAugGggGCc -3'
miRNA:   3'- acgCGCGGUAAca---GCCGUUugCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 113450 0.76 0.565477
Target:  5'- uUGCGCGCUcaaaucggugacggUGUCaGCAAACGAGGUu -3'
miRNA:   3'- -ACGCGCGGua------------ACAGcCGUUUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 32801 0.75 0.574913
Target:  5'- cGcCGCGCCGgcaagcUCGGCGAACGgcGCc -3'
miRNA:   3'- aC-GCGCGGUaac---AGCCGUUUGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 50511 0.75 0.617203
Target:  5'- aGCGCGCCGcg--CGGCAcgauGACGAGGa -3'
miRNA:   3'- aCGCGCGGUaacaGCCGU----UUGCUUCg -5'
6767 3' -52.3 NC_001875.2 + 95136 0.74 0.624639
Target:  5'- aGCGCGCCAcgGcCGGCGaucuggacgauuacGugGAGGUg -3'
miRNA:   3'- aCGCGCGGUaaCaGCCGU--------------UugCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 98635 0.74 0.649076
Target:  5'- cGCGCccGCguUUGcCGGC-AGCGAGGCg -3'
miRNA:   3'- aCGCG--CGguAACaGCCGuUUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 72325 0.74 0.659683
Target:  5'- gUGCGCGUUuUUGcggCGGCAcAUGggGCa -3'
miRNA:   3'- -ACGCGCGGuAACa--GCCGUuUGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 82708 0.74 0.659683
Target:  5'- aGCGcCGCCA--GUCGcGCAGgggcACGggGCa -3'
miRNA:   3'- aCGC-GCGGUaaCAGC-CGUU----UGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.