Results 1 - 20 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6767 | 3' | -52.3 | NC_001875.2 | + | 17104 | 0.72 | 0.762811 |
Target: 5'- cGCGCGCCAcUGgCGGCcgcauAAGC-AAGCa -3' miRNA: 3'- aCGCGCGGUaACaGCCG-----UUUGcUUCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 1750 | 0.73 | 0.700734 |
Target: 5'- cGC-CGCCAUUuccGUCGGCGGAUGugaccacGAGCa -3' miRNA: 3'- aCGcGCGGUAA---CAGCCGUUUGC-------UUCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 1798 | 0.73 | 0.700734 |
Target: 5'- cGC-CGCCAUUuccGUCGGCGGAUGugaccacGAGCa -3' miRNA: 3'- aCGcGCGGUAA---CAGCCGUUUGC-------UUCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 7012 | 0.73 | 0.701777 |
Target: 5'- gGCGCGCCAgUUGcUGGacgUAAGCGAGGUg -3' miRNA: 3'- aCGCGCGGU-AACaGCC---GUUUGCUUCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 80660 | 0.73 | 0.701777 |
Target: 5'- -cCGCGCCGUcGUgGGCAAACuGgcGCa -3' miRNA: 3'- acGCGCGGUAaCAgCCGUUUG-CuuCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 53917 | 0.73 | 0.712167 |
Target: 5'- gGCGCGCCGUUG-CGGgc-GCGuuGGCg -3' miRNA: 3'- aCGCGCGGUAACaGCCguuUGCu-UCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 100194 | 0.73 | 0.726588 |
Target: 5'- aGCGCGCCGUUGUgcgacaacuugcucgUGGCcGugGuucuGAGCa -3' miRNA: 3'- aCGCGCGGUAACA---------------GCCGuUugC----UUCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 51893 | 0.73 | 0.732717 |
Target: 5'- gUGCGUGCCugaa-CGGCGugAACGAGGUg -3' miRNA: 3'- -ACGCGCGGuaacaGCCGU--UUGCUUCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 96060 | 0.72 | 0.762811 |
Target: 5'- uUGCGCGCCAUcacggGUCaaaaGGUgcacgugacuaAAAUGAAGCg -3' miRNA: 3'- -ACGCGCGGUAa----CAG----CCG-----------UUUGCUUCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 90631 | 0.73 | 0.677656 |
Target: 5'- uUGCGCGCCAcaaauugcucaagcUgguccccGUCGGUggGCGuGGCg -3' miRNA: 3'- -ACGCGCGGU--------------Aa------CAGCCGuuUGCuUCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 82708 | 0.74 | 0.659683 |
Target: 5'- aGCGcCGCCA--GUCGcGCAGgggcACGggGCa -3' miRNA: 3'- aCGC-GCGGUaaCAGC-CGUU----UGCuuCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 72325 | 0.74 | 0.659683 |
Target: 5'- gUGCGCGUUuUUGcggCGGCAcAUGggGCa -3' miRNA: 3'- -ACGCGCGGuAACa--GCCGUuUGCuuCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 113580 | 0.8 | 0.356086 |
Target: 5'- gGCGCGCCAUUGggccagcaCGGCGuuCGAgucGGCg -3' miRNA: 3'- aCGCGCGGUAACa-------GCCGUuuGCU---UCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 90444 | 0.79 | 0.407557 |
Target: 5'- cGCGCGCgCAgaggcGUCGGUggGCGgcGCg -3' miRNA: 3'- aCGCGCG-GUaa---CAGCCGuuUGCuuCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 128906 | 0.77 | 0.473143 |
Target: 5'- aGCGCGCCAgcgcgCGGUGAauuugcACGAGGCg -3' miRNA: 3'- aCGCGCGGUaaca-GCCGUU------UGCUUCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 23825 | 0.77 | 0.482946 |
Target: 5'- gGCGCGCCG-UGUCucuGGCGggUGggGUu -3' miRNA: 3'- aCGCGCGGUaACAG---CCGUuuGCuuCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 28786 | 0.77 | 0.492846 |
Target: 5'- aUGCGCaCCGcuUUGUcuaacugaccgCGGCAAACGggGCa -3' miRNA: 3'- -ACGCGcGGU--AACA-----------GCCGUUUGCuuCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 99414 | 0.76 | 0.543627 |
Target: 5'- cGCGCaGCgCAUUGUUGGCcAGCGccGCg -3' miRNA: 3'- aCGCG-CG-GUAACAGCCGuUUGCuuCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 73595 | 0.76 | 0.564431 |
Target: 5'- --aGCGCCAUUuucugCGGCGAugGggGCc -3' miRNA: 3'- acgCGCGGUAAca---GCCGUUugCuuCG- -5' |
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6767 | 3' | -52.3 | NC_001875.2 | + | 32801 | 0.75 | 0.574913 |
Target: 5'- cGcCGCGCCGgcaagcUCGGCGAACGgcGCc -3' miRNA: 3'- aC-GCGCGGUaac---AGCCGUUUGCuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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