miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6767 3' -52.3 NC_001875.2 + 442 0.66 0.9705
Target:  5'- aGCGUGCCGUcGUgcacCGGCGAGUGuucGCg -3'
miRNA:   3'- aCGCGCGGUAaCA----GCCGUUUGCuu-CG- -5'
6767 3' -52.3 NC_001875.2 + 1290 0.7 0.861535
Target:  5'- uUGCGCGUCGacGU-GGUGAACGAuGCg -3'
miRNA:   3'- -ACGCGCGGUaaCAgCCGUUUGCUuCG- -5'
6767 3' -52.3 NC_001875.2 + 1750 0.73 0.700734
Target:  5'- cGC-CGCCAUUuccGUCGGCGGAUGugaccacGAGCa -3'
miRNA:   3'- aCGcGCGGUAA---CAGCCGUUUGC-------UUCG- -5'
6767 3' -52.3 NC_001875.2 + 1798 0.73 0.700734
Target:  5'- cGC-CGCCAUUuccGUCGGCGGAUGugaccacGAGCa -3'
miRNA:   3'- aCGcGCGGUAA---CAGCCGUUUGC-------UUCG- -5'
6767 3' -52.3 NC_001875.2 + 2298 0.68 0.923019
Target:  5'- cGCGCGCCGUgGccgcgcgcagcUCGGCcAGCucGGCc -3'
miRNA:   3'- aCGCGCGGUAaC-----------AGCCGuUUGcuUCG- -5'
6767 3' -52.3 NC_001875.2 + 2662 0.68 0.917188
Target:  5'- uUGCgGCGCCGg---CGGCGccUGggGCa -3'
miRNA:   3'- -ACG-CGCGGUaacaGCCGUuuGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 2689 0.67 0.956669
Target:  5'- cUGCgGCGCC----UCGGCAGACuccAGCa -3'
miRNA:   3'- -ACG-CGCGGuaacAGCCGUUUGcu-UCG- -5'
6767 3' -52.3 NC_001875.2 + 2823 0.66 0.964048
Target:  5'- aGCGCGgCGacGUUGGCGAguaGCuGGGCg -3'
miRNA:   3'- aCGCGCgGUaaCAGCCGUU---UGcUUCG- -5'
6767 3' -52.3 NC_001875.2 + 2952 0.66 0.967387
Target:  5'- gGCGCGCU--UGcUCGGCA-GCGguGUc -3'
miRNA:   3'- aCGCGCGGuaAC-AGCCGUuUGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 3073 0.72 0.782266
Target:  5'- gGCGCGCCGggGUCGcccacggcguGCAcgcgcCGggGCg -3'
miRNA:   3'- aCGCGCGGUaaCAGC----------CGUuu---GCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 3229 0.67 0.947875
Target:  5'- gGUGCGaCCAaugGUCGGCcgguACGAguaaucuGGCa -3'
miRNA:   3'- aCGCGC-GGUaa-CAGCCGuu--UGCU-------UCG- -5'
6767 3' -52.3 NC_001875.2 + 3810 0.68 0.917188
Target:  5'- aGCGUcgaccaccgGCCGUcGUCGGCGcACGccGGCg -3'
miRNA:   3'- aCGCG---------CGGUAaCAGCCGUuUGCu-UCG- -5'
6767 3' -52.3 NC_001875.2 + 5322 0.69 0.891318
Target:  5'- uUGCGCGCUAccUGcUCGcCGAguGCGggGCg -3'
miRNA:   3'- -ACGCGCGGUa-AC-AGCcGUU--UGCuuCG- -5'
6767 3' -52.3 NC_001875.2 + 6197 0.66 0.9705
Target:  5'- cGCGCGCCGUUucaaagCGcGCAAuuGCGuccgucGGCg -3'
miRNA:   3'- aCGCGCGGUAAca----GC-CGUU--UGCu-----UCG- -5'
6767 3' -52.3 NC_001875.2 + 6441 0.67 0.947429
Target:  5'- uUGCGCGCCGUcguaguagcgcgcggUGUucgucaggucgauuaCGGCGcccaacGCGGAGUg -3'
miRNA:   3'- -ACGCGCGGUA---------------ACA---------------GCCGUu-----UGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 6659 0.69 0.891318
Target:  5'- cGCGCGCUcuuacacUCGGUAAAUGAacuuGGCg -3'
miRNA:   3'- aCGCGCGGuaac---AGCCGUUUGCU----UCG- -5'
6767 3' -52.3 NC_001875.2 + 7012 0.73 0.701777
Target:  5'- gGCGCGCCAgUUGcUGGacgUAAGCGAGGUg -3'
miRNA:   3'- aCGCGCGGU-AACaGCC---GUUUGCUUCG- -5'
6767 3' -52.3 NC_001875.2 + 7045 0.69 0.888511
Target:  5'- cGCGCGCU--UGUCGGCcugguuccgcugcGGCGAcGCc -3'
miRNA:   3'- aCGCGCGGuaACAGCCGu------------UUGCUuCG- -5'
6767 3' -52.3 NC_001875.2 + 7444 0.69 0.911101
Target:  5'- cUGCGCGCCGgcgauugcggcggUGUaCGGCcgauucugcgccauuGGACgGGAGCa -3'
miRNA:   3'- -ACGCGCGGUa------------ACA-GCCG---------------UUUG-CUUCG- -5'
6767 3' -52.3 NC_001875.2 + 9140 0.73 0.701777
Target:  5'- cGCGCGCCAgu-UCGGUGuccACGgcGCa -3'
miRNA:   3'- aCGCGCGGUaacAGCCGUu--UGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.