miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6767 5' -49.7 NC_001875.2 + 113128 0.66 0.989567
Target:  5'- -cGCUGUUGUUGUgcGGCAcguuaauguGCACGCc -3'
miRNA:   3'- aaCGACGACAACGa-UCGUu--------UGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 35391 0.66 0.989567
Target:  5'- -cGCUGCUGUccgugGCgcgcGCGAGCgACGCc -3'
miRNA:   3'- aaCGACGACAa----CGau--CGUUUG-UGUGu -5'
6767 5' -49.7 NC_001875.2 + 91434 0.66 0.989567
Target:  5'- -aGCUcGCUGUaGCUgAGCGgcggcgcgugGGCGCGCAu -3'
miRNA:   3'- aaCGA-CGACAaCGA-UCGU----------UUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 97056 0.66 0.989422
Target:  5'- -cGCUGUUG-UGCUcguggauGGCGGAC-CACGu -3'
miRNA:   3'- aaCGACGACaACGA-------UCGUUUGuGUGU- -5'
6767 5' -49.7 NC_001875.2 + 17617 0.66 0.98804
Target:  5'- -aGCUGagcaaGUUGCUGGCcGGACACGg- -3'
miRNA:   3'- aaCGACga---CAACGAUCG-UUUGUGUgu -5'
6767 5' -49.7 NC_001875.2 + 19111 0.66 0.98804
Target:  5'- gUGUUGCUG-UGCgcGC-GACGCGCc -3'
miRNA:   3'- aACGACGACaACGauCGuUUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 18548 0.66 0.984472
Target:  5'- gUGCUGCUGg-GCgugGGUgucuuGAGCGCGCu -3'
miRNA:   3'- aACGACGACaaCGa--UCG-----UUUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 111834 0.67 0.980148
Target:  5'- -gGC-GUUGUUGUUGGCGAACgacuccucguGCACGu -3'
miRNA:   3'- aaCGaCGACAACGAUCGUUUG----------UGUGU- -5'
6767 5' -49.7 NC_001875.2 + 35628 0.67 0.977677
Target:  5'- -gGUUGCguuUGUUGC--GCAAACGCACc -3'
miRNA:   3'- aaCGACG---ACAACGauCGUUUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 118997 0.67 0.977677
Target:  5'- -gGCUGCg--UGCUAGCcGGCGC-CGc -3'
miRNA:   3'- aaCGACGacaACGAUCGuUUGUGuGU- -5'
6767 5' -49.7 NC_001875.2 + 96356 0.67 0.974985
Target:  5'- -cGUcgGCUcGUUGCUGGCGcACAUGCGc -3'
miRNA:   3'- aaCGa-CGA-CAACGAUCGUuUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 107985 0.67 0.974985
Target:  5'- -gGCUGCacGUccGCUGGCGAGCACu-- -3'
miRNA:   3'- aaCGACGa-CAa-CGAUCGUUUGUGugu -5'
6767 5' -49.7 NC_001875.2 + 47198 0.67 0.974985
Target:  5'- -cGCUGCUGg----AGCAcACGCGCGg -3'
miRNA:   3'- aaCGACGACaacgaUCGUuUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 32739 0.67 0.972065
Target:  5'- gUUGCcgaaGCUGUUuuaaGUUGGCAAGCGCAa- -3'
miRNA:   3'- -AACGa---CGACAA----CGAUCGUUUGUGUgu -5'
6767 5' -49.7 NC_001875.2 + 111318 0.67 0.972065
Target:  5'- -cGCUGUcguaaaUGUUGCUgguGGCGGGCGC-CAc -3'
miRNA:   3'- aaCGACG------ACAACGA---UCGUUUGUGuGU- -5'
6767 5' -49.7 NC_001875.2 + 79240 0.68 0.968906
Target:  5'- aUGUaGCUGUUuaaGCUGGUGGugGCGCGc -3'
miRNA:   3'- aACGaCGACAA---CGAUCGUUugUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 59107 0.68 0.965502
Target:  5'- -gGCUGaCggcGUcGCUGGCcGACGCGCAa -3'
miRNA:   3'- aaCGAC-Ga--CAaCGAUCGuUUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 13533 0.68 0.965502
Target:  5'- cUUGCaGCcGUUGUU-GCAAGCGCGCc -3'
miRNA:   3'- -AACGaCGaCAACGAuCGUUUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 23321 0.68 0.965502
Target:  5'- ---gUGCUGUUGCUGGgCGGAaaggaGCACGa -3'
miRNA:   3'- aacgACGACAACGAUC-GUUUg----UGUGU- -5'
6767 5' -49.7 NC_001875.2 + 63880 0.68 0.957924
Target:  5'- uUUGCgGUUGUUGCgaaaAGC--GCGCGCAa -3'
miRNA:   3'- -AACGaCGACAACGa---UCGuuUGUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.