Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6768 | 3' | -57.7 | NC_001875.2 | + | 1733 | 0.68 | 0.720436 |
Target: 5'- aCCGgucGCgCCGCCGCCGCcgccauuuccGUcgGCGGAu- -3' miRNA: 3'- -GGCaa-CG-GGCGGCGGUG----------CA--UGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 1787 | 0.67 | 0.77793 |
Target: 5'- gCCGccGCcgCCGCCGCCAuuucCGUcgGCGGAu- -3' miRNA: 3'- -GGCaaCG--GGCGGCGGU----GCA--UGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 2296 | 0.66 | 0.822378 |
Target: 5'- aCGccgGCCCGCCGUggaGCaUACGGAc- -3' miRNA: 3'- gGCaa-CGGGCGGCGg--UGcAUGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 12289 | 0.66 | 0.822378 |
Target: 5'- aCCGUgugcaGCCggcaCGCCGCCGUGUGCGuGGu- -3' miRNA: 3'- -GGCAa----CGG----GCGGCGGUGCAUGC-CUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 12434 | 0.7 | 0.599218 |
Target: 5'- gCCGUUGCgUGCgCGCCGCGgu-GGAc- -3' miRNA: 3'- -GGCAACGgGCG-GCGGUGCaugCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 18237 | 0.71 | 0.539037 |
Target: 5'- gCCGcgGCCCGCCGCCGacucgaacgcCGUGCuGGc-- -3' miRNA: 3'- -GGCaaCGGGCGGCGGU----------GCAUG-CCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 19969 | 0.66 | 0.830786 |
Target: 5'- gCCGgcGCCuCGCCGUUgcugACGUGCGuGGc- -3' miRNA: 3'- -GGCaaCGG-GCGGCGG----UGCAUGC-CUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 23755 | 0.72 | 0.471672 |
Target: 5'- aCGcUUGUCCGCCGCCuCGUACGc--- -3' miRNA: 3'- gGC-AACGGGCGGCGGuGCAUGCcuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 23786 | 0.67 | 0.77793 |
Target: 5'- aCGUUGCCCagGUCGCCgACGUgucgcuccGCGGc-- -3' miRNA: 3'- gGCAACGGG--CGGCGG-UGCA--------UGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 26873 | 0.7 | 0.599218 |
Target: 5'- gCCGUgcaccaGCCCGCCGCCGCacACGa--- -3' miRNA: 3'- -GGCAa-----CGGGCGGCGGUGcaUGCcuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 28939 | 0.69 | 0.660239 |
Target: 5'- uCCGUUcaacgGCCgGCCGCUcaAUGUGCGGu-- -3' miRNA: 3'- -GGCAA-----CGGgCGGCGG--UGCAUGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 29770 | 0.66 | 0.813798 |
Target: 5'- aCUG-UGCUCGCC-CCAaaugauCGUGCGGGAc -3' miRNA: 3'- -GGCaACGGGCGGcGGU------GCAUGCCUUu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 31250 | 0.67 | 0.787112 |
Target: 5'- gCCGgcGCCCGgC-CCGCGUACGc--- -3' miRNA: 3'- -GGCaaCGGGCgGcGGUGCAUGCcuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 33801 | 0.66 | 0.839016 |
Target: 5'- gCGcacUUGCCCGUCgGCgCACGgcgcGCGGggGa -3' miRNA: 3'- gGC---AACGGGCGG-CG-GUGCa---UGCCuuU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 33950 | 0.67 | 0.768618 |
Target: 5'- gCCGacGCCCGCaacguGCC-CGUGCGGc-- -3' miRNA: 3'- -GGCaaCGGGCGg----CGGuGCAUGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 40578 | 0.7 | 0.619541 |
Target: 5'- -aGUUGCCCGCgCGCUACGUAa----- -3' miRNA: 3'- ggCAACGGGCG-GCGGUGCAUgccuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 41843 | 0.66 | 0.830786 |
Target: 5'- uCCaGUUGCCgCGCCGCgGCG-GCGa--- -3' miRNA: 3'- -GG-CAACGG-GCGGCGgUGCaUGCcuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 46476 | 0.66 | 0.839829 |
Target: 5'- gCGuUUGCCaacgcgaaCGCCGCCACGgcgucggcguucgcgGCGGGc- -3' miRNA: 3'- gGC-AACGG--------GCGGCGGUGCa--------------UGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 49388 | 0.68 | 0.720436 |
Target: 5'- aCCGUU-CCUGCCGCCGCGaACu---- -3' miRNA: 3'- -GGCAAcGGGCGGCGGUGCaUGccuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 59306 | 0.66 | 0.839016 |
Target: 5'- cCCGUUGUuuaauuCCGuuGCCAUGgacACGGuGAg -3' miRNA: 3'- -GGCAACG------GGCggCGGUGCa--UGCCuUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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