Results 1 - 20 of 112 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 121450 | 0.65 | 0.548081 |
Target: 5'- cGCGCCaCGGCGCgGCgGCGUUCaaaguuuUCGGc -3' miRNA: 3'- -UGCGG-GCCGUGgUGgUGCGGG-------AGCCc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 57512 | 0.65 | 0.548081 |
Target: 5'- aACGCCCGGCGCCACaaACGUgUUguagcuagagcagCGGu -3' miRNA: 3'- -UGCGGGCCGUGGUGg-UGCGgGA-------------GCCc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 99056 | 0.66 | 0.519976 |
Target: 5'- -gGCgCGGCGCCcgcCCACGCCgcgcgaggacgcgCUCGaGGa -3' miRNA: 3'- ugCGgGCCGUGGu--GGUGCGG-------------GAGC-CC- -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 97199 | 0.66 | 0.520904 |
Target: 5'- uUGCCCacGGCggccuccaugauGCaCACCuuGUCCUCGGGc -3' miRNA: 3'- uGCGGG--CCG------------UG-GUGGugCGGGAGCCC- -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 59287 | 0.66 | 0.511654 |
Target: 5'- cGCGCCCGcGC-CCGCaGCGCCCg---- -3' miRNA: 3'- -UGCGGGC-CGuGGUGgUGCGGGagccc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 33568 | 0.66 | 0.520904 |
Target: 5'- uCGCCgCGGgG-CACCAUGCCCgagUCGGc -3' miRNA: 3'- uGCGG-GCCgUgGUGGUGCGGG---AGCCc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 56253 | 0.66 | 0.53022 |
Target: 5'- gGCGCgCGGCugCAgUAcuuugcCGCCCUCGu- -3' miRNA: 3'- -UGCGgGCCGugGUgGU------GCGGGAGCcc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 9958 | 0.66 | 0.520904 |
Target: 5'- cACG-CCGGCuuauaGCCACCACGCgUguacaGGGc -3' miRNA: 3'- -UGCgGGCCG-----UGGUGGUGCGgGag---CCC- -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 42573 | 0.66 | 0.539595 |
Target: 5'- cGCGCCagguCGGCGCaCGCgCGCGUCagCUCGGc -3' miRNA: 3'- -UGCGG----GCCGUG-GUG-GUGCGG--GAGCCc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 128728 | 0.66 | 0.539595 |
Target: 5'- cCGCCCaggucuGCGCgcgaGCCGCGCCC-CGGc -3' miRNA: 3'- uGCGGGc-----CGUGg---UGGUGCGGGaGCCc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 43488 | 0.66 | 0.539595 |
Target: 5'- uUGCCCGuGCACgcugcaCACCuugACGCCCUCcaGGu -3' miRNA: 3'- uGCGGGC-CGUG------GUGG---UGCGGGAGc-CC- -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 54750 | 0.66 | 0.520904 |
Target: 5'- gGCGCaccgCCGGCACCGCCAgCGCaaacaGGa -3' miRNA: 3'- -UGCG----GGCCGUGGUGGU-GCGggag-CCc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 125910 | 0.66 | 0.493362 |
Target: 5'- cGCGCCCaccugcgcGGCGCUACCcaACGCCaugcCGGc -3' miRNA: 3'- -UGCGGG--------CCGUGGUGG--UGCGGga--GCCc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 90032 | 0.66 | 0.493362 |
Target: 5'- -gGCCgCGGCGCCGgCGCGCgugCCggCGGa -3' miRNA: 3'- ugCGG-GCCGUGGUgGUGCG---GGa-GCCc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 88089 | 0.66 | 0.499731 |
Target: 5'- aACGCCCGcGCagcagccaaGCCAgCCaACGCCCguuuccaauuacagUUGGGa -3' miRNA: 3'- -UGCGGGC-CG---------UGGU-GG-UGCGGG--------------AGCCC- -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 122065 | 0.66 | 0.511654 |
Target: 5'- gUGCCCGGauguGCCGCgUGCGCuuggCCUCGGa -3' miRNA: 3'- uGCGGGCCg---UGGUG-GUGCG----GGAGCCc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 90391 | 0.66 | 0.502471 |
Target: 5'- cGCGCcgcaaCCGGCGCCugUGCGCgCgcagCGGc -3' miRNA: 3'- -UGCG-----GGCCGUGGugGUGCGgGa---GCCc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 100085 | 0.66 | 0.519976 |
Target: 5'- cGCGCuuGGCACCuacuccgacuaucGCUACGCCaa-GGc -3' miRNA: 3'- -UGCGggCCGUGG-------------UGGUGCGGgagCCc -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 100602 | 0.66 | 0.539595 |
Target: 5'- -gGCCgGGCGCCgGCCGCGgCcgcuguuugCCUCGuGGa -3' miRNA: 3'- ugCGGgCCGUGG-UGGUGC-G---------GGAGC-CC- -5' |
|||||||
6769 | 5' | -64.4 | NC_001875.2 | + | 42739 | 0.66 | 0.533963 |
Target: 5'- cGCGCgCGGCGacgcgcauggugaGCgGCGCgCUCGGGu -3' miRNA: 3'- -UGCGgGCCGUgg-----------UGgUGCGgGAGCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home