miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6769 5' -64.4 NC_001875.2 + 2675 0.67 0.466506
Target:  5'- gGCGCCUGGgGCaACUGCGgCgCCUCGGc -3'
miRNA:   3'- -UGCGGGCCgUGgUGGUGC-G-GGAGCCc -5'
6769 5' -64.4 NC_001875.2 + 5847 0.68 0.382974
Target:  5'- cGCGCCCGcguagcaguGCACCAgCACgcguuuGCCCUCGc- -3'
miRNA:   3'- -UGCGGGC---------CGUGGUgGUG------CGGGAGCcc -5'
6769 5' -64.4 NC_001875.2 + 9085 0.67 0.487933
Target:  5'- uGCGCCUguGGCGagucggcgcuaaaccCCGCCACGaaCUCGGa -3'
miRNA:   3'- -UGCGGG--CCGU---------------GGUGGUGCggGAGCCc -5'
6769 5' -64.4 NC_001875.2 + 9711 0.74 0.170645
Target:  5'- uGCGCgCCGGC-CgCGCCGCGCCCgaagCGuGGc -3'
miRNA:   3'- -UGCG-GGCCGuG-GUGGUGCGGGa---GC-CC- -5'
6769 5' -64.4 NC_001875.2 + 9958 0.66 0.520904
Target:  5'- cACG-CCGGCuuauaGCCACCACGCgUguacaGGGc -3'
miRNA:   3'- -UGCgGGCCG-----UGGUGGUGCGgGag---CCC- -5'
6769 5' -64.4 NC_001875.2 + 10375 0.67 0.463862
Target:  5'- -gGCCUGGCcgaaaacuuugaacGCCGCCGCGCCguggCGcGGc -3'
miRNA:   3'- ugCGGGCCG--------------UGGUGGUGCGGga--GC-CC- -5'
6769 5' -64.4 NC_001875.2 + 12146 0.68 0.431919
Target:  5'- -aGCCCGaGCGCaACCAgCGCUUUCGGc -3'
miRNA:   3'- ugCGGGC-CGUGgUGGU-GCGGGAGCCc -5'
6769 5' -64.4 NC_001875.2 + 12383 0.69 0.337858
Target:  5'- gUGCCaCGGUGCCGCU-CGUCgUCGGGc -3'
miRNA:   3'- uGCGG-GCCGUGGUGGuGCGGgAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 13390 0.67 0.466506
Target:  5'- uACGCaCGGCACCAggCGCGCUUgcaCGGGc -3'
miRNA:   3'- -UGCGgGCCGUGGUg-GUGCGGGa--GCCC- -5'
6769 5' -64.4 NC_001875.2 + 13529 0.67 0.457723
Target:  5'- aGCGCgCGGCcgGCCGCCuCGaCCCugUCGGc -3'
miRNA:   3'- -UGCGgGCCG--UGGUGGuGC-GGG--AGCCc -5'
6769 5' -64.4 NC_001875.2 + 17957 0.75 0.147653
Target:  5'- gUGCCCGGCAgCCAgCGCGUCCccacucuggauUCGGGc -3'
miRNA:   3'- uGCGGGCCGU-GGUgGUGCGGG-----------AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 18278 0.74 0.178995
Target:  5'- gGCGCgCCGuGCGCgACCGCGCCguugaUUGGGa -3'
miRNA:   3'- -UGCG-GGC-CGUGgUGGUGCGGg----AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 23276 0.69 0.367498
Target:  5'- aGCGCCa-GCACCGCCGCGCCgUa--- -3'
miRNA:   3'- -UGCGGgcCGUGGUGGUGCGGgAgccc -5'
6769 5' -64.4 NC_001875.2 + 25818 0.73 0.187705
Target:  5'- gGCGCCCGccgaGCACUGCaACGCCCagaugaagUCGGGg -3'
miRNA:   3'- -UGCGGGC----CGUGGUGgUGCGGG--------AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 25925 0.72 0.242506
Target:  5'- aAUGCCCgaguuuuucguGGUGgCGCCGCGCCCgccaUCGGGu -3'
miRNA:   3'- -UGCGGG-----------CCGUgGUGGUGCGGG----AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 28833 0.69 0.359172
Target:  5'- cACGCCCGcagcgcacuugccGCacGCCACCACguGCCCgcaGGGc -3'
miRNA:   3'- -UGCGGGC-------------CG--UGGUGGUG--CGGGag-CCC- -5'
6769 5' -64.4 NC_001875.2 + 29264 0.72 0.237019
Target:  5'- gUGCgCGGcCGCCgACCGCGCCggCGGGg -3'
miRNA:   3'- uGCGgGCC-GUGG-UGGUGCGGgaGCCC- -5'
6769 5' -64.4 NC_001875.2 + 32970 0.7 0.330725
Target:  5'- gGCGCCCGcgcacauuaGCGCCACCAa-CUCgCGGGa -3'
miRNA:   3'- -UGCGGGC---------CGUGGUGGUgcGGGaGCCC- -5'
6769 5' -64.4 NC_001875.2 + 33345 0.68 0.423508
Target:  5'- uCGCCCGGCAgCCaAUCACGCacgCGGc -3'
miRNA:   3'- uGCGGGCCGU-GG-UGGUGCGggaGCCc -5'
6769 5' -64.4 NC_001875.2 + 33458 0.69 0.370559
Target:  5'- cGCGgCCGGCcaguggucgaaagugGCgCGCCGCGCgCUgGGGu -3'
miRNA:   3'- -UGCgGGCCG---------------UG-GUGGUGCGgGAgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.