miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6769 5' -64.4 NC_001875.2 + 124917 0.7 0.303309
Target:  5'- aGCGCgCGGU----CCACGCCCUCGGc -3'
miRNA:   3'- -UGCGgGCCGugguGGUGCGGGAGCCc -5'
6769 5' -64.4 NC_001875.2 + 44273 0.72 0.239201
Target:  5'- cGCGCCaauGcGCACCcuuuuggcuaugcacACCAUGCCCUCGuGGu -3'
miRNA:   3'- -UGCGGg--C-CGUGG---------------UGGUGCGGGAGC-CC- -5'
6769 5' -64.4 NC_001875.2 + 25925 0.72 0.242506
Target:  5'- aAUGCCCgaguuuuucguGGUGgCGCCGCGCCCgccaUCGGGu -3'
miRNA:   3'- -UGCGGG-----------CCGUgGUGGUGCGGG----AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 65722 0.71 0.259605
Target:  5'- cGCGggCGGCGCCGCCucgcCGCCCgccgcgCGGGc -3'
miRNA:   3'- -UGCggGCCGUGGUGGu---GCGGGa-----GCCC- -5'
6769 5' -64.4 NC_001875.2 + 70217 0.71 0.277675
Target:  5'- gGCGCCCgaGGCGCCGCCGacacaGCCCgaagCGc- -3'
miRNA:   3'- -UGCGGG--CCGUGGUGGUg----CGGGa---GCcc -5'
6769 5' -64.4 NC_001875.2 + 33531 0.7 0.296734
Target:  5'- uUGCCgGGCgaaACCACCACGgCgUCGGu -3'
miRNA:   3'- uGCGGgCCG---UGGUGGUGCgGgAGCCc -5'
6769 5' -64.4 NC_001875.2 + 39204 0.7 0.296734
Target:  5'- uGCGCCgCuacaACCGCCACGUCgUCGGGu -3'
miRNA:   3'- -UGCGG-Gccg-UGGUGGUGCGGgAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 99275 0.7 0.303309
Target:  5'- uGCGCgCGGCACUGCUGCagccGCuCCUCGGcGg -3'
miRNA:   3'- -UGCGgGCCGUGGUGGUG----CG-GGAGCC-C- -5'
6769 5' -64.4 NC_001875.2 + 36820 0.7 0.303309
Target:  5'- cGCGCCgCGGCAgUugCGCGCCCgCGc- -3'
miRNA:   3'- -UGCGG-GCCGUgGugGUGCGGGaGCcc -5'
6769 5' -64.4 NC_001875.2 + 48524 0.72 0.237019
Target:  5'- cCGCCCGGCGC----GCGCCCcgCGGGu -3'
miRNA:   3'- uGCGGGCCGUGguggUGCGGGa-GCCC- -5'
6769 5' -64.4 NC_001875.2 + 29264 0.72 0.237019
Target:  5'- gUGCgCGGcCGCCgACCGCGCCggCGGGg -3'
miRNA:   3'- uGCGgGCC-GUGG-UGGUGCGGgaGCCC- -5'
6769 5' -64.4 NC_001875.2 + 98245 0.72 0.237019
Target:  5'- cUGCCCGuGUucaACCGCCACGUCgccgaCUCGGGc -3'
miRNA:   3'- uGCGGGC-CG---UGGUGGUGCGG-----GAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 17957 0.75 0.147653
Target:  5'- gUGCCCGGCAgCCAgCGCGUCCccacucuggauUCGGGc -3'
miRNA:   3'- uGCGGGCCGU-GGUgGUGCGGG-----------AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 78797 0.75 0.151278
Target:  5'- uACGCCCGGCagguacACCGCUuuGCGCCCguaguccgUGGGc -3'
miRNA:   3'- -UGCGGGCCG------UGGUGG--UGCGGGa-------GCCC- -5'
6769 5' -64.4 NC_001875.2 + 39957 0.74 0.183304
Target:  5'- uUGCCCGaccCGCCGCCgcaccagcagGCGCCCUgGGGg -3'
miRNA:   3'- uGCGGGCc--GUGGUGG----------UGCGGGAgCCC- -5'
6769 5' -64.4 NC_001875.2 + 80636 0.73 0.187261
Target:  5'- cGCGCUcgacgggCGGCGCCagaACCGCGCCgUCGuGGg -3'
miRNA:   3'- -UGCGG-------GCCGUGG---UGGUGCGGgAGC-CC- -5'
6769 5' -64.4 NC_001875.2 + 90238 0.73 0.201469
Target:  5'- gAUGCCCGcGC-CCGcgcCCGCGCCUUCGGc -3'
miRNA:   3'- -UGCGGGC-CGuGGU---GGUGCGGGAGCCc -5'
6769 5' -64.4 NC_001875.2 + 54569 0.73 0.211125
Target:  5'- uGCGCCgCGGCgGCCGCUuCGCCCggCGGc -3'
miRNA:   3'- -UGCGG-GCCG-UGGUGGuGCGGGa-GCCc -5'
6769 5' -64.4 NC_001875.2 + 117344 0.72 0.231103
Target:  5'- gGCGCgggcgaaCCGGCggGCCGgCugGCCgUCGGGg -3'
miRNA:   3'- -UGCG-------GGCCG--UGGUgGugCGGgAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 52513 0.72 0.231635
Target:  5'- gGCGCCaaaGGCAgCGCCGCGCUCaUCGa- -3'
miRNA:   3'- -UGCGGg--CCGUgGUGGUGCGGG-AGCcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.