miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6769 5' -64.4 NC_001875.2 + 91375 1.09 0.000462
Target:  5'- gACGCCCGGCACCACCACGCCCUCGGGg -3'
miRNA:   3'- -UGCGGGCCGUGGUGGUGCGGGAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 40608 0.78 0.097066
Target:  5'- gGCGCCguggugGGCGCCACCACGCgCCUCGc- -3'
miRNA:   3'- -UGCGGg-----CCGUGGUGGUGCG-GGAGCcc -5'
6769 5' -64.4 NC_001875.2 + 17957 0.75 0.147653
Target:  5'- gUGCCCGGCAgCCAgCGCGUCCccacucuggauUCGGGc -3'
miRNA:   3'- uGCGGGCCGU-GGUgGUGCGGG-----------AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 78797 0.75 0.151278
Target:  5'- uACGCCCGGCagguacACCGCUuuGCGCCCguaguccgUGGGc -3'
miRNA:   3'- -UGCGGGCCG------UGGUGG--UGCGGGa-------GCCC- -5'
6769 5' -64.4 NC_001875.2 + 50498 0.74 0.162645
Target:  5'- uGCGCgCGGCACCAgCGCGCCgCgCGGc -3'
miRNA:   3'- -UGCGgGCCGUGGUgGUGCGG-GaGCCc -5'
6769 5' -64.4 NC_001875.2 + 9711 0.74 0.170645
Target:  5'- uGCGCgCCGGC-CgCGCCGCGCCCgaagCGuGGc -3'
miRNA:   3'- -UGCG-GGCCGuG-GUGGUGCGGGa---GC-CC- -5'
6769 5' -64.4 NC_001875.2 + 18278 0.74 0.178995
Target:  5'- gGCGCgCCGuGCGCgACCGCGCCguugaUUGGGa -3'
miRNA:   3'- -UGCG-GGC-CGUGgUGGUGCGGg----AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 39957 0.74 0.183304
Target:  5'- uUGCCCGaccCGCCGCCgcaccagcagGCGCCCUgGGGg -3'
miRNA:   3'- uGCGGGCc--GUGGUGG----------UGCGGGAgCCC- -5'
6769 5' -64.4 NC_001875.2 + 80636 0.73 0.187261
Target:  5'- cGCGCUcgacgggCGGCGCCagaACCGCGCCgUCGuGGg -3'
miRNA:   3'- -UGCGG-------GCCGUGG---UGGUGCGGgAGC-CC- -5'
6769 5' -64.4 NC_001875.2 + 25818 0.73 0.187705
Target:  5'- gGCGCCCGccgaGCACUGCaACGCCCagaugaagUCGGGg -3'
miRNA:   3'- -UGCGGGC----CGUGGUGgUGCGGG--------AGCCC- -5'
6769 5' -64.4 NC_001875.2 + 90238 0.73 0.201469
Target:  5'- gAUGCCCGcGC-CCGcgcCCGCGCCUUCGGc -3'
miRNA:   3'- -UGCGGGC-CGuGGU---GGUGCGGGAGCCc -5'
6769 5' -64.4 NC_001875.2 + 54569 0.73 0.211125
Target:  5'- uGCGCCgCGGCgGCCGCUuCGCCCggCGGc -3'
miRNA:   3'- -UGCGG-GCCG-UGGUGGuGCGGGa-GCCc -5'
6769 5' -64.4 NC_001875.2 + 77397 0.72 0.216102
Target:  5'- gGCGCCgCGGCuaacgACCGCCACGCgCUguUCGGc -3'
miRNA:   3'- -UGCGG-GCCG-----UGGUGGUGCG-GG--AGCCc -5'
6769 5' -64.4 NC_001875.2 + 57531 0.72 0.226355
Target:  5'- cUGUCCGGCGCCugCGCGCCgUaGGc -3'
miRNA:   3'- uGCGGGCCGUGGugGUGCGGgAgCCc -5'
6769 5' -64.4 NC_001875.2 + 98620 0.72 0.226355
Target:  5'- gGCGCCCGGCGagcCCGCGCCCgcguuugcCGGc -3'
miRNA:   3'- -UGCGGGCCGUgguGGUGCGGGa-------GCCc -5'
6769 5' -64.4 NC_001875.2 + 117344 0.72 0.231103
Target:  5'- gGCGCgggcgaaCCGGCggGCCGgCugGCCgUCGGGg -3'
miRNA:   3'- -UGCG-------GGCCG--UGGUgGugCGGgAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 46550 0.72 0.231635
Target:  5'- cGCGCCC-GCGCCGcCCGCGCaaaccgugUUCGGGg -3'
miRNA:   3'- -UGCGGGcCGUGGU-GGUGCGg-------GAGCCC- -5'
6769 5' -64.4 NC_001875.2 + 52513 0.72 0.231635
Target:  5'- gGCGCCaaaGGCAgCGCCGCGCUCaUCGa- -3'
miRNA:   3'- -UGCGGg--CCGUgGUGGUGCGGG-AGCcc -5'
6769 5' -64.4 NC_001875.2 + 48524 0.72 0.237019
Target:  5'- cCGCCCGGCGC----GCGCCCcgCGGGu -3'
miRNA:   3'- uGCGGGCCGUGguggUGCGGGa-GCCC- -5'
6769 5' -64.4 NC_001875.2 + 98245 0.72 0.237019
Target:  5'- cUGCCCGuGUucaACCGCCACGUCgccgaCUCGGGc -3'
miRNA:   3'- uGCGGGC-CG---UGGUGGUGCGG-----GAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.