miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6770 3' -57.1 NC_001875.2 + 102569 0.66 0.859886
Target:  5'- cGCGCCC-CGCCgGcgcGGUcGGCGgccGCGCa -3'
miRNA:   3'- -UGCGGGaGCGGgCa--UCA-CUGCa--UGUG- -5'
6770 3' -57.1 NC_001875.2 + 33953 0.66 0.859886
Target:  5'- gACGCCCgcaacgUGCCCGUGc-GGCGcGCAg -3'
miRNA:   3'- -UGCGGGa-----GCGGGCAUcaCUGCaUGUg -5'
6770 3' -57.1 NC_001875.2 + 82738 0.66 0.859886
Target:  5'- aGCGCUUUaCGCgCaCGUAGUaGuCGUACGCa -3'
miRNA:   3'- -UGCGGGA-GCG-G-GCAUCA-CuGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 54267 0.66 0.844155
Target:  5'- uGCGCCggUC-CCaCGUaaacuuGGUGACGUACACc -3'
miRNA:   3'- -UGCGGg-AGcGG-GCA------UCACUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 98381 0.66 0.835996
Target:  5'- cGCGCCC-CGaCCaCGacgaGGUGGCGgACGCg -3'
miRNA:   3'- -UGCGGGaGC-GG-GCa---UCACUGCaUGUG- -5'
6770 3' -57.1 NC_001875.2 + 85352 0.66 0.835996
Target:  5'- aACGCCgaCG-CCGUGGcGGCGUuCGCg -3'
miRNA:   3'- -UGCGGgaGCgGGCAUCaCUGCAuGUG- -5'
6770 3' -57.1 NC_001875.2 + 84576 0.66 0.83517
Target:  5'- cGCGUCCUCGgucgugaCCCGcUGGUGcacgagGCuGUACACg -3'
miRNA:   3'- -UGCGGGAGC-------GGGC-AUCAC------UG-CAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 58757 0.66 0.827652
Target:  5'- aGCGUacugCUCGCgCGUGGccaacgacGACGUGCGCu -3'
miRNA:   3'- -UGCGg---GAGCGgGCAUCa-------CUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 63618 0.66 0.827652
Target:  5'- uUGCaacUGCCUGUAGUauucGACGUACGCg -3'
miRNA:   3'- uGCGggaGCGGGCAUCA----CUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 5878 0.66 0.825114
Target:  5'- uUGCCCUCGCCgaugcgccgaaccaUGUAGU--CGUACAg -3'
miRNA:   3'- uGCGGGAGCGG--------------GCAUCAcuGCAUGUg -5'
6770 3' -57.1 NC_001875.2 + 124928 0.66 0.81913
Target:  5'- cACGCCCUCGgCCG-AGcGcACGUugGu -3'
miRNA:   3'- -UGCGGGAGCgGGCaUCaC-UGCAugUg -5'
6770 3' -57.1 NC_001875.2 + 86065 0.66 0.81654
Target:  5'- cACGUCCUUGUCCG-AGUaGCGUuugaauauguaacgGCACa -3'
miRNA:   3'- -UGCGGGAGCGGGCaUCAcUGCA--------------UGUG- -5'
6770 3' -57.1 NC_001875.2 + 114014 0.67 0.810439
Target:  5'- gGCGCCCUCGCgCa---UGGCGgccGCGCg -3'
miRNA:   3'- -UGCGGGAGCGgGcaucACUGCa--UGUG- -5'
6770 3' -57.1 NC_001875.2 + 3075 0.67 0.810439
Target:  5'- cGCGCCggggUCGCCCac---GGCGUGCACg -3'
miRNA:   3'- -UGCGGg---AGCGGGcaucaCUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 99738 0.67 0.810439
Target:  5'- cGCGCCUUgucgUGCUCGUGcuGUGACGcgcaagccUGCACg -3'
miRNA:   3'- -UGCGGGA----GCGGGCAU--CACUGC--------AUGUG- -5'
6770 3' -57.1 NC_001875.2 + 46796 0.67 0.801585
Target:  5'- uACGUgC-CGCCCGcAGuUGACGgagGCGCa -3'
miRNA:   3'- -UGCGgGaGCGGGCaUC-ACUGCa--UGUG- -5'
6770 3' -57.1 NC_001875.2 + 33660 0.67 0.798898
Target:  5'- gACGCCgUCGgCggCGUGGUaaaacaaacggcccGACGUGCGCc -3'
miRNA:   3'- -UGCGGgAGCgG--GCAUCA--------------CUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 78814 0.67 0.792578
Target:  5'- cCGCUUUgCGCCCGUAGUccGugG-GCACc -3'
miRNA:   3'- uGCGGGA-GCGGGCAUCA--CugCaUGUG- -5'
6770 3' -57.1 NC_001875.2 + 31246 0.67 0.792578
Target:  5'- cGCGgCCggCGCCCGgccc-GCGUACGCg -3'
miRNA:   3'- -UGCgGGa-GCGGGCaucacUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 122059 0.67 0.774138
Target:  5'- cGCGCag-UGCCCGgauGUGccGCGUGCGCu -3'
miRNA:   3'- -UGCGggaGCGGGCau-CAC--UGCAUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.