miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6771 5' -60.4 NC_001875.2 + 126321 0.66 0.681659
Target:  5'- aCGGcg-GcCGGCGUaaacugCGCGCGuGCGCCGg -3'
miRNA:   3'- aGCCuuaC-GCUGCG------GCGCGU-CGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 88078 0.66 0.720826
Target:  5'- aCGuc-UGCGcaaACGcCCGCGCAGCaGCCa -3'
miRNA:   3'- aGCcuuACGC---UGC-GGCGCGUCG-CGGc -5'
6771 5' -60.4 NC_001875.2 + 5968 0.66 0.719859
Target:  5'- aCGuGAAUGUGGuCGCCgacggcaggcccaGCGC-GUGCCGa -3'
miRNA:   3'- aGC-CUUACGCU-GCGG-------------CGCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 20651 0.66 0.711122
Target:  5'- aCGGc--GCG-CGCCGCcCAGCGCg- -3'
miRNA:   3'- aGCCuuaCGCuGCGGCGcGUCGCGgc -5'
6771 5' -60.4 NC_001875.2 + 30085 0.66 0.675718
Target:  5'- aUGGAcgauucuuuguugcuGUGCGcgcuguACGCCGUGaCGGUGCUGa -3'
miRNA:   3'- aGCCU---------------UACGC------UGCGGCGC-GUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 62473 0.66 0.701354
Target:  5'- gUGGAcgGCG-CGCagcggGCGCA-CGCCGc -3'
miRNA:   3'- aGCCUuaCGCuGCGg----CGCGUcGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 21255 0.66 0.67175
Target:  5'- cUGGucca-GGCGCgCGCGCGGCGCgGc -3'
miRNA:   3'- aGCCuuacgCUGCG-GCGCGUCGCGgC- -5'
6771 5' -60.4 NC_001875.2 + 45742 0.66 0.711122
Target:  5'- ------cGCGAaGCCGUaaacGCGGCGCCGa -3'
miRNA:   3'- agccuuaCGCUgCGGCG----CGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 77030 0.66 0.701354
Target:  5'- uUCGGGcu-CGGCaGCCGCGUcgcggugcuAGUGCCGc -3'
miRNA:   3'- -AGCCUuacGCUG-CGGCGCG---------UCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 58525 0.66 0.711122
Target:  5'- cCGGAccuGUGUcGCGUCGuCGCGGCGUUu -3'
miRNA:   3'- aGCCU---UACGcUGCGGC-GCGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 131531 0.66 0.720826
Target:  5'- cUGGAA-GCGGCGCaaaGCGCGcccGUGuCCGu -3'
miRNA:   3'- aGCCUUaCGCUGCGg--CGCGU---CGC-GGC- -5'
6771 5' -60.4 NC_001875.2 + 3655 0.66 0.711122
Target:  5'- cUGGcGUGUG-UGCUGCGCGcuugcGCGCCa -3'
miRNA:   3'- aGCCuUACGCuGCGGCGCGU-----CGCGGc -5'
6771 5' -60.4 NC_001875.2 + 32782 0.66 0.69153
Target:  5'- cUCGcGcgGCGugGgCGgGCGccGCGCCGg -3'
miRNA:   3'- -AGCcUuaCGCugCgGCgCGU--CGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 55536 0.66 0.69153
Target:  5'- cUCGGAAUGCGACGCgcaugaacaCGgGCA-UGUCc -3'
miRNA:   3'- -AGCCUUACGCUGCG---------GCgCGUcGCGGc -5'
6771 5' -60.4 NC_001875.2 + 125012 0.66 0.67175
Target:  5'- gUCGGGcacguUGuCGACGCgGCGCAGCu--- -3'
miRNA:   3'- -AGCCUu----AC-GCUGCGgCGCGUCGcggc -5'
6771 5' -60.4 NC_001875.2 + 39183 0.66 0.720826
Target:  5'- gCGGu-UGCGugGCguuuaCGguGCGCCGc -3'
miRNA:   3'- aGCCuuACGCugCGgc---GCguCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 69164 0.66 0.715012
Target:  5'- aUCGcGAggcgcagcuaaucacGUGCauuaauCGCgUGCGCGGCGCCGa -3'
miRNA:   3'- -AGC-CU---------------UACGcu----GCG-GCGCGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 81304 0.66 0.67175
Target:  5'- ------cGCG-CGCCGCcgGCGGCGCCu -3'
miRNA:   3'- agccuuaCGCuGCGGCG--CGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 57578 0.66 0.720826
Target:  5'- cCGGc--GCGGCGUCGCGCuguccagaAGCGUgGu -3'
miRNA:   3'- aGCCuuaCGCUGCGGCGCG--------UCGCGgC- -5'
6771 5' -60.4 NC_001875.2 + 50010 0.66 0.701354
Target:  5'- gCGGu-UGgGGCG-CGCGUGGuCGCCGg -3'
miRNA:   3'- aGCCuuACgCUGCgGCGCGUC-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.