miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6771 5' -60.4 NC_001875.2 + 90119 1.08 0.001223
Target:  5'- aUCGGAAUGCGACGCCGCGCAGCGCCGc -3'
miRNA:   3'- -AGCCUUACGCUGCGGCGCGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 2648 0.78 0.14966
Target:  5'- aCGGAcacgucuacuUGCGGCGCCG-GCGGCGCCu -3'
miRNA:   3'- aGCCUu---------ACGCUGCGGCgCGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 53682 0.78 0.157317
Target:  5'- ------aGaCGGCGCCGCGCAGCGCCa -3'
miRNA:   3'- agccuuaC-GCUGCGGCGCGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 23251 0.77 0.165326
Target:  5'- gUCGGAGaacaGCGACGggcaGCGCAGCGCCa -3'
miRNA:   3'- -AGCCUUa---CGCUGCgg--CGCGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 41708 0.77 0.178026
Target:  5'- -aGGGcguAUGCGcgGCGCUGCGCGGCGUCGc -3'
miRNA:   3'- agCCU---UACGC--UGCGGCGCGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 21664 0.76 0.199665
Target:  5'- gCGGAcgagcgcaGUGCGACGCCGCccgacgagcgcgacGCGGUGCUGc -3'
miRNA:   3'- aGCCU--------UACGCUGCGGCG--------------CGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 65798 0.76 0.206043
Target:  5'- gUCGGcgcGCGGUGCCuGCGCGGCGCCa -3'
miRNA:   3'- -AGCCuuaCGCUGCGG-CGCGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 18162 0.76 0.21568
Target:  5'- gCGGcgcgcGCGACGCCGCcacugugGCGGUGCCGg -3'
miRNA:   3'- aGCCuua--CGCUGCGGCG-------CGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 94715 0.75 0.221434
Target:  5'- gCGGAAaGaCGcaaACGCCgGCGCGGCGCCGc -3'
miRNA:   3'- aGCCUUaC-GC---UGCGG-CGCGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 37105 0.75 0.226778
Target:  5'- gUGGGuGUGCgGGCGCgGCGCcGCGCCGg -3'
miRNA:   3'- aGCCU-UACG-CUGCGgCGCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 38632 0.75 0.232231
Target:  5'- gUUGGGAcaGUGACGCCGCGUAuugcGCGCUGg -3'
miRNA:   3'- -AGCCUUa-CGCUGCGGCGCGU----CGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 74101 0.75 0.243468
Target:  5'- gUUGGGcaGCGACGCCGUGCuGGCGCg- -3'
miRNA:   3'- -AGCCUuaCGCUGCGGCGCG-UCGCGgc -5'
6771 5' -60.4 NC_001875.2 + 98735 0.75 0.243468
Target:  5'- cCGGGucgugGUGCGugcucaGCCGCGaCGGCGCCGc -3'
miRNA:   3'- aGCCU-----UACGCug----CGGCGC-GUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 78158 0.75 0.243468
Target:  5'- ----cGUGuUGGCGCUGCGCGGCGCCGu -3'
miRNA:   3'- agccuUAC-GCUGCGGCGCGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 98791 0.75 0.243468
Target:  5'- gCGGAAcGCuaucGCGCgGCGCGGCGCCc -3'
miRNA:   3'- aGCCUUaCGc---UGCGgCGCGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 54146 0.74 0.261167
Target:  5'- gCGGAcgGCGGCaGUCGCGCAaauacGCGCuCGg -3'
miRNA:   3'- aGCCUuaCGCUG-CGGCGCGU-----CGCG-GC- -5'
6771 5' -60.4 NC_001875.2 + 91180 0.74 0.273539
Target:  5'- aCGGAAUGU--CGCCGCGCAacaGCCGg -3'
miRNA:   3'- aGCCUUACGcuGCGGCGCGUcg-CGGC- -5'
6771 5' -60.4 NC_001875.2 + 43306 0.74 0.273539
Target:  5'- aUGGggUaGCGGCGCgCGCGCGG-GUCGg -3'
miRNA:   3'- aGCCuuA-CGCUGCG-GCGCGUCgCGGC- -5'
6771 5' -60.4 NC_001875.2 + 103448 0.74 0.2799
Target:  5'- cUGGucUGCGGCGUCGUGCA-CGCCGc -3'
miRNA:   3'- aGCCuuACGCUGCGGCGCGUcGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 68559 0.74 0.292972
Target:  5'- cCGcGGcgGCGGCGgucgcgcaCCGCGUGGCGCCGc -3'
miRNA:   3'- aGC-CUuaCGCUGC--------GGCGCGUCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.