miRNA display CGI


Results 1 - 20 of 241 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6771 5' -60.4 NC_001875.2 + 65777 0.71 0.397685
Target:  5'- gCGGGcgGCGGCGCguCGuCGUugAGCGCCa -3'
miRNA:   3'- aGCCUuaCGCUGCG--GC-GCG--UCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 62239 0.72 0.357654
Target:  5'- gUGGAc-GCG-CGCCGCGUaaAGCGCCa -3'
miRNA:   3'- aGCCUuaCGCuGCGGCGCG--UCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 17334 0.72 0.373323
Target:  5'- gCGGu-UGCGcCGCCGCGCGaccGCGUCa -3'
miRNA:   3'- aGCCuuACGCuGCGGCGCGU---CGCGGc -5'
6771 5' -60.4 NC_001875.2 + 102407 0.72 0.373323
Target:  5'- -aGGuacGUGuCGGCGUCGCGCucgccguugccgAGCGCCGg -3'
miRNA:   3'- agCCu--UAC-GCUGCGGCGCG------------UCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 41925 0.72 0.38133
Target:  5'- gCGGAc-GCGcCGCCcuuuauauGCGCGGCGCCa -3'
miRNA:   3'- aGCCUuaCGCuGCGG--------CGCGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 69228 0.72 0.38133
Target:  5'- uUCGG---GCGACG-CGCGCuGUGCCGa -3'
miRNA:   3'- -AGCCuuaCGCUGCgGCGCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 90358 0.72 0.384565
Target:  5'- cCGGccgGCGcagaccacacaagacACGCCGCGC-GCGCCGc -3'
miRNA:   3'- aGCCuuaCGC---------------UGCGGCGCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 84402 0.71 0.389452
Target:  5'- cCGGAGcuucgGCGGCGgCGCGUauaGGUGCCa -3'
miRNA:   3'- aGCCUUa----CGCUGCgGCGCG---UCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 67861 0.71 0.396857
Target:  5'- aCGGggUGCGuCGCCagauucugguucaGCGCggucggcgacAGCGCCu -3'
miRNA:   3'- aGCCuuACGCuGCGG-------------CGCG----------UCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 87986 0.73 0.327722
Target:  5'- cCGcGuacGCGACGcCCGCGCAGCaGCCa -3'
miRNA:   3'- aGC-CuuaCGCUGC-GGCGCGUCG-CGGc -5'
6771 5' -60.4 NC_001875.2 + 68559 0.74 0.292972
Target:  5'- cCGcGGcgGCGGCGgucgcgcaCCGCGUGGCGCCGc -3'
miRNA:   3'- aGC-CUuaCGCUGC--------GGCGCGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 103448 0.74 0.2799
Target:  5'- cUGGucUGCGGCGUCGUGCA-CGCCGc -3'
miRNA:   3'- aGCCuuACGCUGCGGCGCGUcGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 18162 0.76 0.21568
Target:  5'- gCGGcgcgcGCGACGCCGCcacugugGCGGUGCCGg -3'
miRNA:   3'- aGCCuua--CGCUGCGGCG-------CGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 37105 0.75 0.226778
Target:  5'- gUGGGuGUGCgGGCGCgGCGCcGCGCCGg -3'
miRNA:   3'- aGCCU-UACG-CUGCGgCGCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 74101 0.75 0.243468
Target:  5'- gUUGGGcaGCGACGCCGUGCuGGCGCg- -3'
miRNA:   3'- -AGCCUuaCGCUGCGGCGCG-UCGCGgc -5'
6771 5' -60.4 NC_001875.2 + 78158 0.75 0.243468
Target:  5'- ----cGUGuUGGCGCUGCGCGGCGCCGu -3'
miRNA:   3'- agccuUAC-GCUGCGGCGCGUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 98735 0.75 0.243468
Target:  5'- cCGGGucgugGUGCGugcucaGCCGCGaCGGCGCCGc -3'
miRNA:   3'- aGCCU-----UACGCug----CGGCGC-GUCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 98791 0.75 0.243468
Target:  5'- gCGGAAcGCuaucGCGCgGCGCGGCGCCc -3'
miRNA:   3'- aGCCUUaCGc---UGCGgCGCGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 43306 0.74 0.273539
Target:  5'- aUGGggUaGCGGCGCgCGCGCGG-GUCGg -3'
miRNA:   3'- aGCCuuA-CGCUGCG-GCGCGUCgCGGC- -5'
6771 5' -60.4 NC_001875.2 + 91180 0.74 0.273539
Target:  5'- aCGGAAUGU--CGCCGCGCAacaGCCGg -3'
miRNA:   3'- aGCCUUACGcuGCGGCGCGUcg-CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.