miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6771 5' -60.4 NC_001875.2 + 2272 0.66 0.67175
Target:  5'- gCGGGccAUGuUGACGUCgugauGCGCGcGCGCCGu -3'
miRNA:   3'- aGCCU--UAC-GCUGCGG-----CGCGU-CGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 2377 0.7 0.458316
Target:  5'- gUUGGAGUcCGACaGCUGCGCccAGUGCCu -3'
miRNA:   3'- -AGCCUUAcGCUG-CGGCGCG--UCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 2648 0.78 0.14966
Target:  5'- aCGGAcacgucuacuUGCGGCGCCG-GCGGCGCCu -3'
miRNA:   3'- aGCCUu---------ACGCUGCGGCgCGUCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 3000 0.66 0.701354
Target:  5'- uUCGGGcggguugaaGUGCGcguCGCCGUGCAaguuguacaCGCCGu -3'
miRNA:   3'- -AGCCU---------UACGCu--GCGGCGCGUc--------GCGGC- -5'
6771 5' -60.4 NC_001875.2 + 3079 0.68 0.552588
Target:  5'- cCGGggUcGCccACGgCGUGCAcGCGCCGg -3'
miRNA:   3'- aGCCuuA-CGc-UGCgGCGCGU-CGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 3130 0.7 0.449349
Target:  5'- cUGGGcgGCGAagccCGCUGCGCggacgcGGCGUCGg -3'
miRNA:   3'- aGCCUuaCGCU----GCGGCGCG------UCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 3503 0.71 0.414483
Target:  5'- uUCGGGGuauUGCGACGCCccauuguuuuuGCGCauuuGGCGCaCGu -3'
miRNA:   3'- -AGCCUU---ACGCUGCGG-----------CGCG----UCGCG-GC- -5'
6771 5' -60.4 NC_001875.2 + 3655 0.66 0.711122
Target:  5'- cUGGcGUGUG-UGCUGCGCGcuugcGCGCCa -3'
miRNA:   3'- aGCCuUACGCuGCGGCGCGU-----CGCGGc -5'
6771 5' -60.4 NC_001875.2 + 5968 0.66 0.719859
Target:  5'- aCGuGAAUGUGGuCGCCgacggcaggcccaGCGC-GUGCCGa -3'
miRNA:   3'- aGC-CUUACGCU-GCGG-------------CGCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 6496 0.69 0.523541
Target:  5'- gCGGAGUGCcGCGCCaacaCGCuGGCcGCCGu -3'
miRNA:   3'- aGCCUUACGcUGCGGc---GCG-UCG-CGGC- -5'
6771 5' -60.4 NC_001875.2 + 6809 0.66 0.711122
Target:  5'- aUCGGGucGCuGAaccaGCUGCGCcGCGUCGa -3'
miRNA:   3'- -AGCCUuaCG-CUg---CGGCGCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 6922 0.68 0.579133
Target:  5'- cUCGGccgaggGCGugGaCCGCGCGcuacaacaaaacccGCGCCu -3'
miRNA:   3'- -AGCCuua---CGCugC-GGCGCGU--------------CGCGGc -5'
6771 5' -60.4 NC_001875.2 + 6945 0.68 0.572221
Target:  5'- gCGucGUGCGuGCGCCGCGaCAuCGCCa -3'
miRNA:   3'- aGCcuUACGC-UGCGGCGC-GUcGCGGc -5'
6771 5' -60.4 NC_001875.2 + 7110 0.7 0.467378
Target:  5'- cUCGGAcgGCGGCgaaacgGCCGaCGC-GUGCCu -3'
miRNA:   3'- -AGCCUuaCGCUG------CGGC-GCGuCGCGGc -5'
6771 5' -60.4 NC_001875.2 + 7793 0.66 0.67175
Target:  5'- gUUGuuGUGCcACGUCGUGCuuucGCGCCGg -3'
miRNA:   3'- -AGCcuUACGcUGCGGCGCGu---CGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 8452 0.68 0.566312
Target:  5'- aCGGccaAAUGCGggugcuuggucACGUCGCGCggaaacaccacgccgGGCGCCGu -3'
miRNA:   3'- aGCC---UUACGC-----------UGCGGCGCG---------------UCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 9024 0.69 0.542847
Target:  5'- cUCGGAcgccuUGCGuuuggaGCCGCcgGCcGCGCCGg -3'
miRNA:   3'- -AGCCUu----ACGCug----CGGCG--CGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 9705 0.68 0.601957
Target:  5'- cCGucGUGCG-CGCCG-GCcGCGCCGc -3'
miRNA:   3'- aGCcuUACGCuGCGGCgCGuCGCGGC- -5'
6771 5' -60.4 NC_001875.2 + 10881 0.68 0.572221
Target:  5'- gUCGGug-GCGcUGCCGCGCAacGUGuuGg -3'
miRNA:   3'- -AGCCuuaCGCuGCGGCGCGU--CGCggC- -5'
6771 5' -60.4 NC_001875.2 + 11155 0.68 0.601957
Target:  5'- aCGGGGagGCGuacCGCgCGCGCAucgacaaguugcGCGCCGu -3'
miRNA:   3'- aGCCUUa-CGCu--GCG-GCGCGU------------CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.