miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6772 5' -58.5 NC_001875.2 + 55509 0.65 0.796594
Target:  5'- gGUGGCGCagcaccugcucgauGGCGGCucggaaUGcGACGCGCAugaACa -3'
miRNA:   3'- -CGCCGCG--------------CCGUUG------AC-CUGCGCGU---UGa -5'
6772 5' -58.5 NC_001875.2 + 33458 0.66 0.790292
Target:  5'- cGCGGC-CGGCcAgUGGucgaaagugGCGCGCcGCg -3'
miRNA:   3'- -CGCCGcGCCGuUgACC---------UGCGCGuUGa -5'
6772 5' -58.5 NC_001875.2 + 40469 0.66 0.753046
Target:  5'- -gGGCGUGGUggUgccGGGCgucaugucGCGCAACg -3'
miRNA:   3'- cgCCGCGCCGuuGa--CCUG--------CGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 124540 0.66 0.753046
Target:  5'- uGCGGCGagucgggguCGGCGGCgGGGuCGCuuugGCGGCa -3'
miRNA:   3'- -CGCCGC---------GCCGUUGaCCU-GCG----CGUUGa -5'
6772 5' -58.5 NC_001875.2 + 13018 0.66 0.762537
Target:  5'- cGCuucGCGCGGCAGCUuugcaaaaaGCGCGCAAa- -3'
miRNA:   3'- -CGc--CGCGCCGUUGAcc-------UGCGCGUUga -5'
6772 5' -58.5 NC_001875.2 + 80520 0.66 0.790292
Target:  5'- aUGGCGCGuGCgAGCUGGcCGaCGCccACUa -3'
miRNA:   3'- cGCCGCGC-CG-UUGACCuGC-GCGu-UGA- -5'
6772 5' -58.5 NC_001875.2 + 126323 0.66 0.790292
Target:  5'- gGCGGC-CGGCGuaaACUGcGCGCGUg--- -3'
miRNA:   3'- -CGCCGcGCCGU---UGACcUGCGCGuuga -5'
6772 5' -58.5 NC_001875.2 + 69196 0.66 0.750177
Target:  5'- cGCGuGCGCGGCGccgacggccaguacGCUuguucGGGCGaCGCGcGCUg -3'
miRNA:   3'- -CGC-CGCGCCGU--------------UGA-----CCUGC-GCGU-UGA- -5'
6772 5' -58.5 NC_001875.2 + 831 0.66 0.771915
Target:  5'- gGUGGUGgGGC----GGugGUGCAGCa -3'
miRNA:   3'- -CGCCGCgCCGuugaCCugCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 32132 0.66 0.756856
Target:  5'- uGCGaGCGCcgcauagcgcucaacGGCGGCgaaGACGCGCuGCUc -3'
miRNA:   3'- -CGC-CGCG---------------CCGUUGac-CUGCGCGuUGA- -5'
6772 5' -58.5 NC_001875.2 + 54957 0.66 0.790292
Target:  5'- uGCGcGCGCGuuuGCcGGACGCGUcGCUc -3'
miRNA:   3'- -CGC-CGCGCcguUGaCCUGCGCGuUGA- -5'
6772 5' -58.5 NC_001875.2 + 113599 0.66 0.770983
Target:  5'- aCGGCGUucgagucGGCGGCgGGcCGCgGCGGCa -3'
miRNA:   3'- cGCCGCG-------CCGUUGaCCuGCG-CGUUGa -5'
6772 5' -58.5 NC_001875.2 + 59106 0.66 0.753046
Target:  5'- -aGGCuGaCGGCGucGCUGGccgACGCGCAAg- -3'
miRNA:   3'- cgCCG-C-GCCGU--UGACC---UGCGCGUUga -5'
6772 5' -58.5 NC_001875.2 + 97740 0.66 0.781169
Target:  5'- aGCGcGCGCGcucguGCAACcccggcacGGGCGUGUGGCUg -3'
miRNA:   3'- -CGC-CGCGC-----CGUUGa-------CCUGCGCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 47670 0.66 0.771915
Target:  5'- aCGGaCGCGGCcGC-GG-CGCGCcGCg -3'
miRNA:   3'- cGCC-GCGCCGuUGaCCuGCGCGuUGa -5'
6772 5' -58.5 NC_001875.2 + 50240 0.66 0.761593
Target:  5'- cGCGGCGCGGCAucuucuccuGCUcauacagcguaucGGGCagGUGguACa -3'
miRNA:   3'- -CGCCGCGCCGU---------UGA-------------CCUG--CGCguUGa -5'
6772 5' -58.5 NC_001875.2 + 28669 0.66 0.753046
Target:  5'- gGCGGCGUgGGCGACaUGGcguACGUGUuguuuAACg -3'
miRNA:   3'- -CGCCGCG-CCGUUG-ACC---UGCGCG-----UUGa -5'
6772 5' -58.5 NC_001875.2 + 2294 0.66 0.753046
Target:  5'- uGCGcGCGCGcCG--UGGccGCGCGCAGCUc -3'
miRNA:   3'- -CGC-CGCGCcGUugACC--UGCGCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 11081 0.66 0.756856
Target:  5'- cGUGGCGCGcGCc-CUGGACacggccgccgucucgGCGCcGCa -3'
miRNA:   3'- -CGCCGCGC-CGuuGACCUG---------------CGCGuUGa -5'
6772 5' -58.5 NC_001875.2 + 128953 0.66 0.771915
Target:  5'- aGCGGCuaaGGCGugaGCUGGGCGaGCGGa- -3'
miRNA:   3'- -CGCCGcg-CCGU---UGACCUGCgCGUUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.