miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6772 5' -58.5 NC_001875.2 + 4 0.74 0.354719
Target:  5'- -gGGCGCGGCGACagGGGgGUGCAc-- -3'
miRNA:   3'- cgCCGCGCCGUUGa-CCUgCGCGUuga -5'
6772 5' -58.5 NC_001875.2 + 60 0.68 0.659918
Target:  5'- gGCGGCgGCGGCGAacgacaccaauGACGCGCcGCc -3'
miRNA:   3'- -CGCCG-CGCCGUUgac--------CUGCGCGuUGa -5'
6772 5' -58.5 NC_001875.2 + 791 0.67 0.733756
Target:  5'- aGCuGuGCGCGGCAAUUGuuuUGCGCAGa- -3'
miRNA:   3'- -CG-C-CGCGCCGUUGACcu-GCGCGUUga -5'
6772 5' -58.5 NC_001875.2 + 831 0.66 0.771915
Target:  5'- gGUGGUGgGGC----GGugGUGCAGCa -3'
miRNA:   3'- -CGCCGCgCCGuugaCCugCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 2294 0.66 0.753046
Target:  5'- uGCGcGCGCGcCG--UGGccGCGCGCAGCUc -3'
miRNA:   3'- -CGC-CGCGCcGUugACC--UGCGCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 2672 0.76 0.269784
Target:  5'- gGCGGCGCcuggGGCAACUGcGGCGCcuCGGCa -3'
miRNA:   3'- -CGCCGCG----CCGUUGAC-CUGCGc-GUUGa -5'
6772 5' -58.5 NC_001875.2 + 2819 0.73 0.362592
Target:  5'- cGCGaGCGCGGCGACguuGGCGaGUAGCUg -3'
miRNA:   3'- -CGC-CGCGCCGUUGac-CUGCgCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 3048 0.67 0.723976
Target:  5'- -gGGCaGCGcGUAAgaGG-CGCGCAGCg -3'
miRNA:   3'- cgCCG-CGC-CGUUgaCCuGCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 3111 0.69 0.613183
Target:  5'- cGCGGCucGCGGCGcagacCUGGGCG-GCGAa- -3'
miRNA:   3'- -CGCCG--CGCCGUu----GACCUGCgCGUUga -5'
6772 5' -58.5 NC_001875.2 + 3150 0.67 0.704192
Target:  5'- cGCGGaCGCGGCGuc-GGGCG-GCGAgUa -3'
miRNA:   3'- -CGCC-GCGCCGUugaCCUGCgCGUUgA- -5'
6772 5' -58.5 NC_001875.2 + 3209 0.69 0.572754
Target:  5'- uGCGGCgGCGGUuggauGGCgUGGGCGCGuUGGCg -3'
miRNA:   3'- -CGCCG-CGCCG-----UUG-ACCUGCGC-GUUGa -5'
6772 5' -58.5 NC_001875.2 + 5350 0.67 0.732782
Target:  5'- gGCGGUGCuGGuCAuugaccacccGCUGGACGUGUucggugaGACg -3'
miRNA:   3'- -CGCCGCG-CC-GU----------UGACCUGCGCG-------UUGa -5'
6772 5' -58.5 NC_001875.2 + 7009 0.7 0.532983
Target:  5'- cGUGGCGCGcCAguuGCUGGACGUaaGCGAg- -3'
miRNA:   3'- -CGCCGCGCcGU---UGACCUGCG--CGUUga -5'
6772 5' -58.5 NC_001875.2 + 7087 0.66 0.781169
Target:  5'- gGCGGCagcuacuacGUGcGCGGCUcGGACG-GCGGCg -3'
miRNA:   3'- -CGCCG---------CGC-CGUUGA-CCUGCgCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 7984 0.74 0.346967
Target:  5'- uGCGGUGCuuaguugaccGGCGGCUGauUGCGCAACUg -3'
miRNA:   3'- -CGCCGCG----------CCGUUGACcuGCGCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 9604 0.68 0.684167
Target:  5'- -gGGCGCGuGCAAC--GACGCGUuuguGCUa -3'
miRNA:   3'- cgCCGCGC-CGUUGacCUGCGCGu---UGA- -5'
6772 5' -58.5 NC_001875.2 + 10407 0.77 0.224965
Target:  5'- cGUGGCGCGGCAcccGCUGcacuacccaacauuuGGCGCaGCAGCUu -3'
miRNA:   3'- -CGCCGCGCCGU---UGAC---------------CUGCG-CGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 10457 0.71 0.503815
Target:  5'- cGCGGCGCGGCGGCgcgcucaGuGAaugGCGCuuGCUg -3'
miRNA:   3'- -CGCCGCGCCGUUGa------C-CUg--CGCGu-UGA- -5'
6772 5' -58.5 NC_001875.2 + 10678 0.68 0.674086
Target:  5'- uUGGCGCaGGCGcugccgcaacgGCUGGACGCcCcGCUc -3'
miRNA:   3'- cGCCGCG-CCGU-----------UGACCUGCGcGuUGA- -5'
6772 5' -58.5 NC_001875.2 + 11081 0.66 0.756856
Target:  5'- cGUGGCGCGcGCc-CUGGACacggccgccgucucgGCGCcGCa -3'
miRNA:   3'- -CGCCGCGC-CGuuGACCUG---------------CGCGuUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.