miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6772 5' -58.5 NC_001875.2 + 37511 0.71 0.456841
Target:  5'- aCGGUGCGGaCGACgcgcccugccUGGACGCGCccAACc -3'
miRNA:   3'- cGCCGCGCC-GUUG----------ACCUGCGCG--UUGa -5'
6772 5' -58.5 NC_001875.2 + 81339 0.73 0.370586
Target:  5'- uGCcGCGCGGCGcGCUGGugccGCGCGCAcGCg -3'
miRNA:   3'- -CGcCGCGCCGU-UGACC----UGCGCGU-UGa -5'
6772 5' -58.5 NC_001875.2 + 99398 0.73 0.370586
Target:  5'- gGCGGCGC--CAGCgGGuCGCGCAGCg -3'
miRNA:   3'- -CGCCGCGccGUUGaCCuGCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 71694 0.73 0.378699
Target:  5'- uGCGGCGUGGUgcacgacggacAACUGGGacCGCuGCGGCa -3'
miRNA:   3'- -CGCCGCGCCG-----------UUGACCU--GCG-CGUUGa -5'
6772 5' -58.5 NC_001875.2 + 83010 0.73 0.39528
Target:  5'- aCGGCGU--CAGCUGGaccGCGCGCAGCg -3'
miRNA:   3'- cGCCGCGccGUUGACC---UGCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 91444 0.72 0.412322
Target:  5'- aGCuGaGCGGCGGCgcgUGGGCGCGCAugUc -3'
miRNA:   3'- -CGcCgCGCCGUUG---ACCUGCGCGUugA- -5'
6772 5' -58.5 NC_001875.2 + 11963 0.72 0.420138
Target:  5'- gGCGGCGCguugcaaagcacuGGCGACggcguUGGGCGCGgGugUg -3'
miRNA:   3'- -CGCCGCG-------------CCGUUG-----ACCUGCGCgUugA- -5'
6772 5' -58.5 NC_001875.2 + 79118 0.72 0.429811
Target:  5'- aCGGCGUugucGGCGGC-GGGCGcCGCGGCg -3'
miRNA:   3'- cGCCGCG----CCGUUGaCCUGC-GCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 90387 0.72 0.438717
Target:  5'- cGCGcGCGCcGCAACcGGcgccugugcGCGCGCAGCg -3'
miRNA:   3'- -CGC-CGCGcCGUUGaCC---------UGCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 74152 0.73 0.369781
Target:  5'- -gGGCGCGGCGcccgccgccgccaGCuUGGACGCGUuuuGCg -3'
miRNA:   3'- cgCCGCGCCGU-------------UG-ACCUGCGCGu--UGa -5'
6772 5' -58.5 NC_001875.2 + 7984 0.74 0.346967
Target:  5'- uGCGGUGCuuaguugaccGGCGGCUGauUGCGCAACUg -3'
miRNA:   3'- -CGCCGCG----------CCGUUGACcuGCGCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 122135 0.74 0.339337
Target:  5'- cGCGGCGCGGCc----GGCGCGCAcgACg -3'
miRNA:   3'- -CGCCGCGCCGuugacCUGCGCGU--UGa -5'
6772 5' -58.5 NC_001875.2 + 100705 0.79 0.174017
Target:  5'- cGCGGCGCGuuaaGCAugcacauuGCUGcGGCGCGCGGCa -3'
miRNA:   3'- -CGCCGCGC----CGU--------UGAC-CUGCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 131518 0.78 0.202015
Target:  5'- cGCGGUGCaGCGGCUGGAagcgGCGCAAa- -3'
miRNA:   3'- -CGCCGCGcCGUUGACCUg---CGCGUUga -5'
6772 5' -58.5 NC_001875.2 + 10407 0.77 0.224965
Target:  5'- cGUGGCGCGGCAcccGCUGcacuacccaacauuuGGCGCaGCAGCUu -3'
miRNA:   3'- -CGCCGCGCCGU---UGAC---------------CUGCG-CGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 37901 0.76 0.245355
Target:  5'- uGCuGGCGCGGC-ACUGGcacCGCGCGugUu -3'
miRNA:   3'- -CG-CCGCGCCGuUGACCu--GCGCGUugA- -5'
6772 5' -58.5 NC_001875.2 + 70197 0.76 0.263499
Target:  5'- gGCGGCGaCGGCGaccACUGGGCGCcCGAg- -3'
miRNA:   3'- -CGCCGC-GCCGU---UGACCUGCGcGUUga -5'
6772 5' -58.5 NC_001875.2 + 90709 0.75 0.282717
Target:  5'- cCGGCGCGGCcGCcGGucaaGCGCGACa -3'
miRNA:   3'- cGCCGCGCCGuUGaCCug--CGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 108568 0.75 0.310044
Target:  5'- aCGGCGCGGCGguGCUGGcGCuGCGCuGCc -3'
miRNA:   3'- cGCCGCGCCGU--UGACC-UG-CGCGuUGa -5'
6772 5' -58.5 NC_001875.2 + 36883 0.74 0.329601
Target:  5'- cGUGcGCGCGGCAcaccgccggcaggaACUGGGuuguguagUGCGCGACUg -3'
miRNA:   3'- -CGC-CGCGCCGU--------------UGACCU--------GCGCGUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.