miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6772 5' -58.5 NC_001875.2 + 90005 1.1 0.001215
Target:  5'- cGCGGCGCGGCAACUGGACGCGCAACUg -3'
miRNA:   3'- -CGCCGCGCCGUUGACCUGCGCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 11936 0.82 0.098848
Target:  5'- cGCGGCGCGcCGACUGuGCGCGCGACc -3'
miRNA:   3'- -CGCCGCGCcGUUGACcUGCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 73789 0.8 0.153382
Target:  5'- uGUGGCgGCGGCGGCUGGAaCG-GCAGCg -3'
miRNA:   3'- -CGCCG-CGCCGUUGACCU-GCgCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 52206 0.8 0.153382
Target:  5'- gGCGacuGCGCGccguGCaAACUGGACGCGCGACUg -3'
miRNA:   3'- -CGC---CGCGC----CG-UUGACCUGCGCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 100705 0.79 0.174017
Target:  5'- cGCGGCGCGuuaaGCAugcacauuGCUGcGGCGCGCGGCa -3'
miRNA:   3'- -CGCCGCGC----CGU--------UGAC-CUGCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 131518 0.78 0.202015
Target:  5'- cGCGGUGCaGCGGCUGGAagcgGCGCAAa- -3'
miRNA:   3'- -CGCCGCGcCGUUGACCUg---CGCGUUga -5'
6772 5' -58.5 NC_001875.2 + 86145 0.77 0.207045
Target:  5'- cGCGGCGCGcGCGGCgagaugacGGACGUGguGCg -3'
miRNA:   3'- -CGCCGCGC-CGUUGa-------CCUGCGCguUGa -5'
6772 5' -58.5 NC_001875.2 + 13805 0.77 0.212184
Target:  5'- gGUGGCGCGGCGuugccgucgcACUGGuCGCGguACc -3'
miRNA:   3'- -CGCCGCGCCGU----------UGACCuGCGCguUGa -5'
6772 5' -58.5 NC_001875.2 + 102002 0.77 0.217432
Target:  5'- gGCGuGCGCGGCGGCggUGGAC-UGCAGCg -3'
miRNA:   3'- -CGC-CGCGCCGUUG--ACCUGcGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 120645 0.77 0.22279
Target:  5'- cCGGCGCGGCGucguGCUccacaacGGCGCGCAACUu -3'
miRNA:   3'- cGCCGCGCCGU----UGAc------CUGCGCGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 10407 0.77 0.224965
Target:  5'- cGUGGCGCGGCAcccGCUGcacuacccaacauuuGGCGCaGCAGCUu -3'
miRNA:   3'- -CGCCGCGCCGU---UGAC---------------CUGCG-CGUUGA- -5'
6772 5' -58.5 NC_001875.2 + 73624 0.77 0.22826
Target:  5'- gGCGGCuGCGGCGGCUGcGGCGgcugcUGCGGCg -3'
miRNA:   3'- -CGCCG-CGCCGUUGAC-CUGC-----GCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 118209 0.76 0.239542
Target:  5'- gGCGGCGCGGCAACcgccugccacauUGGAgaCGauCGCAACg -3'
miRNA:   3'- -CGCCGCGCCGUUG------------ACCU--GC--GCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 95015 0.76 0.245355
Target:  5'- aGUGGCGCGggcgcGCAACUGccgcGGCGCGUAACg -3'
miRNA:   3'- -CGCCGCGC-----CGUUGAC----CUGCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 37901 0.76 0.245355
Target:  5'- uGCuGGCGCGGC-ACUGGcacCGCGCGugUu -3'
miRNA:   3'- -CG-CCGCGCCGuUGACCu--GCGCGUugA- -5'
6772 5' -58.5 NC_001875.2 + 119412 0.76 0.257333
Target:  5'- cGCGGCGCGcacGCAACggccugcuuGGCGCGCGGCa -3'
miRNA:   3'- -CGCCGCGC---CGUUGac-------CUGCGCGUUGa -5'
6772 5' -58.5 NC_001875.2 + 70197 0.76 0.263499
Target:  5'- gGCGGCGaCGGCGaccACUGGGCGCcCGAg- -3'
miRNA:   3'- -CGCCGC-GCCGU---UGACCUGCGcGUUga -5'
6772 5' -58.5 NC_001875.2 + 2672 0.76 0.269784
Target:  5'- gGCGGCGCcuggGGCAACUGcGGCGCcuCGGCa -3'
miRNA:   3'- -CGCCGCG----CCGUUGAC-CUGCGc-GUUGa -5'
6772 5' -58.5 NC_001875.2 + 21956 0.75 0.27619
Target:  5'- cGCGGCGCGGgGA-UGGGCgGCGcCAGCg -3'
miRNA:   3'- -CGCCGCGCCgUUgACCUG-CGC-GUUGa -5'
6772 5' -58.5 NC_001875.2 + 90709 0.75 0.282717
Target:  5'- cCGGCGCGGCcGCcGGucaaGCGCGACa -3'
miRNA:   3'- cGCCGCGCCGuUGaCCug--CGCGUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.