Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6773 | 3' | -52.9 | NC_001875.2 | + | 102411 | 0.66 | 0.970975 |
Target: 5'- aCGUGUCGgCGuCGCGCUcgccgUUGccGAGCGc -3' miRNA: 3'- -GCACGGCgGC-GCGCGAua---AAC--UUUGC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 1526 | 0.66 | 0.96081 |
Target: 5'- gGUGCgggcgcucucgaaCGgCGCGUGCUAUUUuuAGCGg -3' miRNA: 3'- gCACG-------------GCgGCGCGCGAUAAAcuUUGC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 110573 | 0.66 | 0.957448 |
Target: 5'- uCGUGCucguagccgCGCCGCGCGCgcgccUGGAcCa -3' miRNA: 3'- -GCACG---------GCGGCGCGCGauaa-ACUUuGc -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 69620 | 0.66 | 0.96793 |
Target: 5'- aCGUGCUGuuGgCGCGCgaggUG-GACGc -3' miRNA: 3'- -GCACGGCggC-GCGCGauaaACuUUGC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 106879 | 0.66 | 0.970975 |
Target: 5'- uCGUGCguuUGuuGUGCGUUGUUUGuGugGu -3' miRNA: 3'- -GCACG---GCggCGCGCGAUAAACuUugC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 97868 | 0.66 | 0.96793 |
Target: 5'- aCGUGCCggucgGCUGCGCGCcgcacgGgcACGu -3' miRNA: 3'- -GCACGG-----CGGCGCGCGauaaa-CuuUGC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 106912 | 0.66 | 0.970975 |
Target: 5'- uCGUGCguuUGuuGUGCGUUGUUUGuGugGu -3' miRNA: 3'- -GCACG---GCggCGCGCGAUAAACuUugC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 107000 | 0.66 | 0.970975 |
Target: 5'- uCGUGCguuUGuuGUGCGUUGUUUGuGugGu -3' miRNA: 3'- -GCACG---GCggCGCGCGAUAAACuUugC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 85783 | 0.66 | 0.957063 |
Target: 5'- --cGCCGCCGUuucuGCGCcGUUcauguugUGAAGCa -3' miRNA: 3'- gcaCGGCGGCG----CGCGaUAA-------ACUUUGc -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 82936 | 0.66 | 0.970975 |
Target: 5'- -aUGCUGCCGgGCGCgac--GAAAUa -3' miRNA: 3'- gcACGGCGGCgCGCGauaaaCUUUGc -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 46555 | 0.66 | 0.957448 |
Target: 5'- cCGcGCCGCC-CGCGCaaaccgUGUUcGggGCGc -3' miRNA: 3'- -GCaCGGCGGcGCGCG------AUAAaCuuUGC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 124770 | 0.66 | 0.96793 |
Target: 5'- -cUGCCGCC-CGUGUUGUU--GAGCGc -3' miRNA: 3'- gcACGGCGGcGCGCGAUAAacUUUGC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 67142 | 0.66 | 0.964664 |
Target: 5'- cCGUGuuGCUGCG-GCUGUcUGc-GCGg -3' miRNA: 3'- -GCACggCGGCGCgCGAUAaACuuUGC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 29305 | 0.66 | 0.961172 |
Target: 5'- gCGUGUCG-UGCGCGUUGUUgcgcacAAACGg -3' miRNA: 3'- -GCACGGCgGCGCGCGAUAAac----UUUGC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 19225 | 0.66 | 0.957448 |
Target: 5'- ---aCCGCCGUGCGCgaGUUUguggaaGAGACGg -3' miRNA: 3'- gcacGGCGGCGCGCGa-UAAA------CUUUGC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 100028 | 0.66 | 0.965997 |
Target: 5'- gGUGCacuGuuGCGCGCUGguuuugcuguuugUGGAGCu -3' miRNA: 3'- gCACGg--CggCGCGCGAUaa-----------ACUUUGc -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 92315 | 0.66 | 0.964664 |
Target: 5'- --cGCCGCaCGCGCGC-AUUguuAACa -3' miRNA: 3'- gcaCGGCG-GCGCGCGaUAAacuUUGc -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 48285 | 0.66 | 0.957448 |
Target: 5'- uGUGuCCGCCGCGUGCcAUUg------ -3' miRNA: 3'- gCAC-GGCGGCGCGCGaUAAacuuugc -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 111983 | 0.66 | 0.962596 |
Target: 5'- cCGcGCCGCgacgcggccgagucuUGCGCGCUGUUUuacAACGa -3' miRNA: 3'- -GCaCGGCG---------------GCGCGCGAUAAAcu-UUGC- -5' |
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6773 | 3' | -52.9 | NC_001875.2 | + | 100609 | 0.66 | 0.961172 |
Target: 5'- --cGCCgGCCGCGgcCGCUGUUUGccuCGu -3' miRNA: 3'- gcaCGG-CGGCGC--GCGAUAAACuuuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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