miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6773 3' -52.9 NC_001875.2 + 266 0.72 0.737828
Target:  5'- uGUGUuuUGCCGCGCGUUGUcgUUGAAcuccACGu -3'
miRNA:   3'- gCACG--GCGGCGCGCGAUA--AACUU----UGC- -5'
6773 3' -52.9 NC_001875.2 + 1526 0.66 0.96081
Target:  5'- gGUGCgggcgcucucgaaCGgCGCGUGCUAUUUuuAGCGg -3'
miRNA:   3'- gCACG-------------GCgGCGCGCGAUAAAcuUUGC- -5'
6773 3' -52.9 NC_001875.2 + 1592 0.66 0.96081
Target:  5'- gGUGCgaacgcucucgaaCGgCGCGUGCUAUUUuuAGCGg -3'
miRNA:   3'- gCACG-------------GCgGCGCGCGAUAAAcuUUGC- -5'
6773 3' -52.9 NC_001875.2 + 1658 0.66 0.96081
Target:  5'- gGUGCgaacgcucucgaaCGgCGCGUGCUAUUUuuAGCGg -3'
miRNA:   3'- gCACG-------------GCgGCGCGCGAUAAAcuUUGC- -5'
6773 3' -52.9 NC_001875.2 + 1784 0.66 0.96081
Target:  5'- gGUGCgaacgcucucgaaCGgCGCGUGCUAUUUuuAGCGg -3'
miRNA:   3'- gCACG-------------GCgGCGCGCGAUAAAcuUUGC- -5'
6773 3' -52.9 NC_001875.2 + 6952 0.69 0.864378
Target:  5'- gCGUGCgccgcgacauCGCCacgGCGCGCUGcUUGAcAGCGg -3'
miRNA:   3'- -GCACG----------GCGG---CGCGCGAUaAACU-UUGC- -5'
6773 3' -52.9 NC_001875.2 + 7608 0.7 0.831689
Target:  5'- uGUGCCGCCGCcCGCaacaacaaAUUUGAAcccGCa -3'
miRNA:   3'- gCACGGCGGCGcGCGa-------UAAACUU---UGc -5'
6773 3' -52.9 NC_001875.2 + 9708 0.68 0.924551
Target:  5'- uCGUGCgCGCCGgcCGCGCcgcgcccGAAGCGu -3'
miRNA:   3'- -GCACG-GCGGC--GCGCGauaaa--CUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 10396 0.67 0.935198
Target:  5'- --cGCCGCCGCGC-Cg---UGgcGCGg -3'
miRNA:   3'- gcaCGGCGGCGCGcGauaaACuuUGC- -5'
6773 3' -52.9 NC_001875.2 + 10462 0.68 0.912896
Target:  5'- --cGCgGCgGCGCGCUcagUGAAugGc -3'
miRNA:   3'- gcaCGgCGgCGCGCGAuaaACUUugC- -5'
6773 3' -52.9 NC_001875.2 + 10638 0.71 0.77709
Target:  5'- gGUGCCGCCcaGCGUGCaGUacUUGGgcGGCGg -3'
miRNA:   3'- gCACGGCGG--CGCGCGaUA--AACU--UUGC- -5'
6773 3' -52.9 NC_001875.2 + 12306 0.69 0.872015
Target:  5'- --cGCCGCCGUGUGCg---UGGucAACGc -3'
miRNA:   3'- gcaCGGCGGCGCGCGauaaACU--UUGC- -5'
6773 3' -52.9 NC_001875.2 + 12390 0.69 0.893541
Target:  5'- gGUGCCGCUcgucgucggGC-CGCUGUUUGccGCGc -3'
miRNA:   3'- gCACGGCGG---------CGcGCGAUAAACuuUGC- -5'
6773 3' -52.9 NC_001875.2 + 14930 0.67 0.946646
Target:  5'- uGUGCgccaccCGCCGCGCGCggcuagcgcAGACGa -3'
miRNA:   3'- gCACG------GCGGCGCGCGauaaac---UUUGC- -5'
6773 3' -52.9 NC_001875.2 + 17637 0.7 0.829107
Target:  5'- aCGUaCCGCCcaacuugcgcaaucGCGCGCUGgcggUGAAGCu -3'
miRNA:   3'- -GCAcGGCGG--------------CGCGCGAUaa--ACUUUGc -5'
6773 3' -52.9 NC_001875.2 + 18284 0.67 0.935198
Target:  5'- cCGUGCgCGaCCGCGCcGUUGaUUGGGAUu -3'
miRNA:   3'- -GCACG-GC-GGCGCG-CGAUaAACUUUGc -5'
6773 3' -52.9 NC_001875.2 + 18546 0.67 0.944838
Target:  5'- aCGUGCUGCUGgGCGUgggUGUcUUGAGcGCGc -3'
miRNA:   3'- -GCACGGCGGCgCGCG---AUA-AACUU-UGC- -5'
6773 3' -52.9 NC_001875.2 + 18717 0.67 0.944838
Target:  5'- aCGUGCCGCacaacaacaGCGCGCccaaAUaUGAAaagGCGu -3'
miRNA:   3'- -GCACGGCGg--------CGCGCGa---UAaACUU---UGC- -5'
6773 3' -52.9 NC_001875.2 + 19109 0.67 0.953487
Target:  5'- cCGUGuuGCUGUGCGCgc---GAcGCGc -3'
miRNA:   3'- -GCACggCGGCGCGCGauaaaCUuUGC- -5'
6773 3' -52.9 NC_001875.2 + 19225 0.66 0.957448
Target:  5'- ---aCCGCCGUGCGCgaGUUUguggaaGAGACGg -3'
miRNA:   3'- gcacGGCGGCGCGCGa-UAAA------CUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.