miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6773 3' -52.9 NC_001875.2 + 51922 0.69 0.885894
Target:  5'- -aUGCCGCCGCugcacagcgugcgGCGCUAcUUUGGGcGCGn -3'
miRNA:   3'- gcACGGCGGCG-------------CGCGAU-AAACUU-UGC- -5'
6773 3' -52.9 NC_001875.2 + 118320 0.71 0.814163
Target:  5'- gCG-GCCgGCCGCGCGCUGcaggUGAugAACc -3'
miRNA:   3'- -GCaCGG-CGGCGCGCGAUaa--ACU--UUGc -5'
6773 3' -52.9 NC_001875.2 + 64852 0.7 0.823018
Target:  5'- uGUGUCGCUGCGCaGCUugccuuUUUGAugAGCa -3'
miRNA:   3'- gCACGGCGGCGCG-CGAu-----AAACU--UUGc -5'
6773 3' -52.9 NC_001875.2 + 100905 0.7 0.831689
Target:  5'- --cGCCGCaGCGCGCg----GAGACGc -3'
miRNA:   3'- gcaCGGCGgCGCGCGauaaaCUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 6952 0.69 0.864378
Target:  5'- gCGUGCgccgcgacauCGCCacgGCGCGCUGcUUGAcAGCGg -3'
miRNA:   3'- -GCACG----------GCGG---CGCGCGAUaAACU-UUGC- -5'
6773 3' -52.9 NC_001875.2 + 85213 0.69 0.864378
Target:  5'- aCGgGCCGCCGCGCGgUAgcgccgcaUGucGACGa -3'
miRNA:   3'- -GCaCGGCGGCGCGCgAUaa------ACu-UUGC- -5'
6773 3' -52.9 NC_001875.2 + 12306 0.69 0.872015
Target:  5'- --cGCCGCCGUGUGCg---UGGucAACGc -3'
miRNA:   3'- gcaCGGCGGCGCGCGauaaACU--UUGC- -5'
6773 3' -52.9 NC_001875.2 + 41243 0.69 0.872015
Target:  5'- uCG-GCCGUCGCGUGCUAcaaacuGAACGu -3'
miRNA:   3'- -GCaCGGCGGCGCGCGAUaaac--UUUGC- -5'
6773 3' -52.9 NC_001875.2 + 118461 0.69 0.872015
Target:  5'- gCGUGCUG-CGuCGCGCUGUggaAAACGg -3'
miRNA:   3'- -GCACGGCgGC-GCGCGAUAaacUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 10638 0.71 0.77709
Target:  5'- gGUGCCGCCcaGCGUGCaGUacUUGGgcGGCGg -3'
miRNA:   3'- gCACGGCGG--CGCGCGaUA--AACU--UUGC- -5'
6773 3' -52.9 NC_001875.2 + 81336 0.72 0.767456
Target:  5'- uCGUGCCGCgCgGCGCGCUGg-UGccGCGc -3'
miRNA:   3'- -GCACGGCG-G-CGCGCGAUaaACuuUGC- -5'
6773 3' -52.9 NC_001875.2 + 122074 0.72 0.737828
Target:  5'- uGUGCCG-CGUGCGCUuggccucGGAACGg -3'
miRNA:   3'- gCACGGCgGCGCGCGAuaaa---CUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 38455 0.8 0.331555
Target:  5'- aGUGCCGgCGCGCGCUAgaaUUGguGCa -3'
miRNA:   3'- gCACGGCgGCGCGCGAUa--AACuuUGc -5'
6773 3' -52.9 NC_001875.2 + 110767 0.78 0.42403
Target:  5'- --cGCCGCCGCGCGCU-UUUGcccaAAACGc -3'
miRNA:   3'- gcaCGGCGGCGCGCGAuAAAC----UUUGC- -5'
6773 3' -52.9 NC_001875.2 + 117943 0.76 0.53029
Target:  5'- gCGUGCgCGCCGcCGCGUUugGUUUGGucGACGa -3'
miRNA:   3'- -GCACG-GCGGC-GCGCGA--UAAACU--UUGC- -5'
6773 3' -52.9 NC_001875.2 + 76706 0.74 0.634245
Target:  5'- gGUGCCGCCGUcggucGCGCUGagcgucggUGAcGCGg -3'
miRNA:   3'- gCACGGCGGCG-----CGCGAUaa------ACUuUGC- -5'
6773 3' -52.9 NC_001875.2 + 33479 0.74 0.644762
Target:  5'- aGUgGCgCGCCGCGCGCUGg--GguGCGc -3'
miRNA:   3'- gCA-CG-GCGGCGCGCGAUaaaCuuUGC- -5'
6773 3' -52.9 NC_001875.2 + 37352 0.74 0.65527
Target:  5'- gCGcGCgGCCGCGCGCUcgUgcGAACGc -3'
miRNA:   3'- -GCaCGgCGGCGCGCGAuaAacUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 95746 0.73 0.665757
Target:  5'- --cGCCGCCGCGUGCUGccgcgcGAGCGc -3'
miRNA:   3'- gcaCGGCGGCGCGCGAUaaac--UUUGC- -5'
6773 3' -52.9 NC_001875.2 + 71175 0.73 0.686636
Target:  5'- -cUGCCGCCaGCGCGCacUUUGguACGc -3'
miRNA:   3'- gcACGGCGG-CGCGCGauAAACuuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.