miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6773 3' -52.9 NC_001875.2 + 89640 1.09 0.005353
Target:  5'- gCGUGCCGCCGCGCGCUAUUUGAAACGc -3'
miRNA:   3'- -GCACGGCGGCGCGCGAUAAACUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 51962 0.8 0.323922
Target:  5'- aCGUGCCGCaCGCGCGCgcg-UGGAccACGc -3'
miRNA:   3'- -GCACGGCG-GCGCGCGauaaACUU--UGC- -5'
6773 3' -52.9 NC_001875.2 + 38455 0.8 0.331555
Target:  5'- aGUGCCGgCGCGCGCUAgaaUUGguGCa -3'
miRNA:   3'- gCACGGCgGCGCGCGAUa--AACuuUGc -5'
6773 3' -52.9 NC_001875.2 + 125624 0.79 0.362579
Target:  5'- gCGUGUCGCCgacggacgcaauuGCGCGCU--UUGAAACGg -3'
miRNA:   3'- -GCACGGCGG-------------CGCGCGAuaAACUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 110767 0.78 0.42403
Target:  5'- --cGCCGCCGCGCGCU-UUUGcccaAAACGc -3'
miRNA:   3'- gcaCGGCGGCGCGCGAuAAAC----UUUGC- -5'
6773 3' -52.9 NC_001875.2 + 41342 0.78 0.42403
Target:  5'- cCGUGCaaguggGCCGCGCGCaGUUUGAAcGCGc -3'
miRNA:   3'- -GCACGg-----CGGCGCGCGaUAAACUU-UGC- -5'
6773 3' -52.9 NC_001875.2 + 117943 0.76 0.53029
Target:  5'- gCGUGCgCGCCGcCGCGUUugGUUUGGucGACGa -3'
miRNA:   3'- -GCACG-GCGGC-GCGCGA--UAAACU--UUGC- -5'
6773 3' -52.9 NC_001875.2 + 76706 0.74 0.634245
Target:  5'- gGUGCCGCCGUcggucGCGCUGagcgucggUGAcGCGg -3'
miRNA:   3'- gCACGGCGGCG-----CGCGAUaa------ACUuUGC- -5'
6773 3' -52.9 NC_001875.2 + 113152 0.74 0.634245
Target:  5'- uGUGCaCGCCgGCGCGCgcgccGUUUGAuAUGg -3'
miRNA:   3'- gCACG-GCGG-CGCGCGa----UAAACUuUGC- -5'
6773 3' -52.9 NC_001875.2 + 33479 0.74 0.644762
Target:  5'- aGUgGCgCGCCGCGCGCUGg--GguGCGc -3'
miRNA:   3'- gCA-CG-GCGGCGCGCGAUaaaCuuUGC- -5'
6773 3' -52.9 NC_001875.2 + 37352 0.74 0.65527
Target:  5'- gCGcGCgGCCGCGCGCUcgUgcGAACGc -3'
miRNA:   3'- -GCaCGgCGGCGCGCGAuaAacUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 95746 0.73 0.665757
Target:  5'- --cGCCGCCGCGUGCUGccgcgcGAGCGc -3'
miRNA:   3'- gcaCGGCGGCGCGCGAUaaac--UUUGC- -5'
6773 3' -52.9 NC_001875.2 + 71175 0.73 0.686636
Target:  5'- -cUGCCGCCaGCGCGCacUUUGguACGc -3'
miRNA:   3'- gcACGGCGG-CGCGCGauAAACuuUGC- -5'
6773 3' -52.9 NC_001875.2 + 122074 0.72 0.737828
Target:  5'- uGUGCCG-CGUGCGCUuggccucGGAACGg -3'
miRNA:   3'- gCACGGCgGCGCGCGAuaaa---CUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 266 0.72 0.737828
Target:  5'- uGUGUuuUGCCGCGCGUUGUcgUUGAAcuccACGu -3'
miRNA:   3'- gCACG--GCGGCGCGCGAUA--AACUU----UGC- -5'
6773 3' -52.9 NC_001875.2 + 46797 0.72 0.757694
Target:  5'- aCGUGCCGCC-CGCaGUUGacgGAGGCGc -3'
miRNA:   3'- -GCACGGCGGcGCG-CGAUaaaCUUUGC- -5'
6773 3' -52.9 NC_001875.2 + 81336 0.72 0.767456
Target:  5'- uCGUGCCGCgCgGCGCGCUGg-UGccGCGc -3'
miRNA:   3'- -GCACGGCG-G-CGCGCGAUaaACuuUGC- -5'
6773 3' -52.9 NC_001875.2 + 10638 0.71 0.77709
Target:  5'- gGUGCCGCCcaGCGUGCaGUacUUGGgcGGCGg -3'
miRNA:   3'- gCACGGCGG--CGCGCGaUA--AACU--UUGC- -5'
6773 3' -52.9 NC_001875.2 + 118320 0.71 0.814163
Target:  5'- gCG-GCCgGCCGCGCGCUGcaggUGAugAACc -3'
miRNA:   3'- -GCaCGG-CGGCGCGCGAUaa--ACU--UUGc -5'
6773 3' -52.9 NC_001875.2 + 64852 0.7 0.823018
Target:  5'- uGUGUCGCUGCGCaGCUugccuuUUUGAugAGCa -3'
miRNA:   3'- gCACGGCGGCGCG-CGAu-----AAACU--UUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.