miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 3' -49.2 NC_001875.2 + 88869 1.13 0.005634
Target:  5'- cCGCCUUUCAAAGCAUUGUUGGCGCGCu -3'
miRNA:   3'- -GCGGAAAGUUUCGUAACAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 41210 0.69 0.978131
Target:  5'- aGCUU----GAGCAauUUG-UGGCGCGCa -3'
miRNA:   3'- gCGGAaaguUUCGU--AACaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 18248 0.69 0.978131
Target:  5'- cCGCCgacUCGAAcGCcgUGcuggcccaaUGGCGCGCc -3'
miRNA:   3'- -GCGGaa-AGUUU-CGuaACa--------ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 112822 0.66 0.997424
Target:  5'- aCGCCgcgcacgugCAAAGCGc-GUUGcggccuGCGCGCa -3'
miRNA:   3'- -GCGGaaa------GUUUCGUaaCAAC------CGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 85838 0.76 0.75247
Target:  5'- aCGUCgugCAccGCGUUGUugUGGUGCGCg -3'
miRNA:   3'- -GCGGaaaGUuuCGUAACA--ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 81982 0.73 0.855441
Target:  5'- gCGCCgg-CAAGGCGcgccgGccGGCGCGCa -3'
miRNA:   3'- -GCGGaaaGUUUCGUaa---CaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 20901 0.72 0.893843
Target:  5'- gCGCCagccCGucGCAUUGUUcgugugGGCGCGCc -3'
miRNA:   3'- -GCGGaaa-GUuuCGUAACAA------CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 46439 0.72 0.913817
Target:  5'- gGCCUUUUu-GGUuacggUGGCGCGCa -3'
miRNA:   3'- gCGGAAAGuuUCGuaacaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 50562 0.69 0.966478
Target:  5'- uGUCUUuugCGGGGCAUUcGUUGGUGCu- -3'
miRNA:   3'- gCGGAAa--GUUUCGUAA-CAACCGCGcg -5'
6775 3' -49.2 NC_001875.2 + 2925 0.69 0.97555
Target:  5'- cCGCCUcgugcaaaUUCAccGCGcgc-UGGCGCGCu -3'
miRNA:   3'- -GCGGA--------AAGUuuCGUaacaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 119898 0.69 0.972753
Target:  5'- cCGCCggUCGcgcGCAcaGUcGGCGCGCc -3'
miRNA:   3'- -GCGGaaAGUuu-CGUaaCAaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 88180 0.7 0.959247
Target:  5'- uGCauggUCGAGGCGUgcaccaacGGCGCGCa -3'
miRNA:   3'- gCGgaa-AGUUUCGUAacaa----CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 119815 0.8 0.52741
Target:  5'- uCGuCCUcgauUUCAAAGCGuUUGUUGGCcGCGCu -3'
miRNA:   3'- -GC-GGA----AAGUUUCGU-AACAACCG-CGCG- -5'
6775 3' -49.2 NC_001875.2 + 84919 0.69 0.97528
Target:  5'- uGUCUUUCAgauagacgguaagAAGCAUaGUgUGGCcGCGCc -3'
miRNA:   3'- gCGGAAAGU-------------UUCGUAaCA-ACCG-CGCG- -5'
6775 3' -49.2 NC_001875.2 + 120747 0.78 0.613246
Target:  5'- gCGCCgagaCGGGGCcgUGUccagGGCGCGCg -3'
miRNA:   3'- -GCGGaaa-GUUUCGuaACAa---CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 84665 0.7 0.951009
Target:  5'- gCGCCUugcaUUCGugcAGCGUUGgUGGCGggaaCGCa -3'
miRNA:   3'- -GCGGA----AAGUu--UCGUAACaACCGC----GCG- -5'
6775 3' -49.2 NC_001875.2 + 18433 0.69 0.97555
Target:  5'- uCGgCg--CGAGGCGcgGUccgcgUGGCGCGCg -3'
miRNA:   3'- -GCgGaaaGUUUCGUaaCA-----ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 64355 0.69 0.978131
Target:  5'- gGCgUUUCGcaacugcgaGAGCAUccUGUgccGGCGCGUc -3'
miRNA:   3'- gCGgAAAGU---------UUCGUA--ACAa--CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 127397 0.78 0.645928
Target:  5'- aGCCUggcCAAAGUGcUGgcGGCGCGCg -3'
miRNA:   3'- gCGGAaa-GUUUCGUaACaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 35847 0.73 0.871537
Target:  5'- gGCCUUuugCAGGGUAcUGcacGGCGCGCu -3'
miRNA:   3'- gCGGAAa--GUUUCGUaACaa-CCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.