miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 5' -53.8 NC_001875.2 + 89346 0.65 0.953723
Target:  5'- cGGCGCACGCggacgacggcgugCGCGUgcgcgUGuuGCUGCGugGCu -3'
miRNA:   3'- aCUGCGUGCG-------------GUGCAa----AC--UGACGC--UG- -5'
6775 5' -53.8 NC_001875.2 + 131513 0.66 0.945562
Target:  5'- cGGCGCGCGgUgcaGCGgcUGGaaGCGGCg -3'
miRNA:   3'- aCUGCGUGCgG---UGCaaACUgaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 21512 0.66 0.936009
Target:  5'- -cACGCACGCCca--UUGGCUGUGGu -3'
miRNA:   3'- acUGCGUGCGGugcaAACUGACGCUg -5'
6775 5' -53.8 NC_001875.2 + 32425 0.66 0.930856
Target:  5'- cGGCGCugGCCAacaaUGcGCUGCG-Cg -3'
miRNA:   3'- aCUGCGugCGGUgcaaAC-UGACGCuG- -5'
6775 5' -53.8 NC_001875.2 + 39359 0.66 0.94091
Target:  5'- cUGACGCcCGCCGucuCGUgccuaccCUGCGGCc -3'
miRNA:   3'- -ACUGCGuGCGGU---GCAaacu---GACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 10866 0.66 0.936009
Target:  5'- cGACGCGgugGCCGCGUcggUGgcGCUGCcGCg -3'
miRNA:   3'- aCUGCGUg--CGGUGCAa--AC--UGACGcUG- -5'
6775 5' -53.8 NC_001875.2 + 84304 0.66 0.945562
Target:  5'- aGAUGCGCGCCuaguaGCGgc-GcCUGCGGu -3'
miRNA:   3'- aCUGCGUGCGG-----UGCaaaCuGACGCUg -5'
6775 5' -53.8 NC_001875.2 + 5923 0.66 0.94091
Target:  5'- aUGGCGUuggguaGCGCCGCGcaggugGGC-GCGGCc -3'
miRNA:   3'- -ACUGCG------UGCGGUGCaaa---CUGaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 80622 0.66 0.945562
Target:  5'- gGGCGCGCGgaaCGCGcgcucGACggGCGGCg -3'
miRNA:   3'- aCUGCGUGCg--GUGCaaa--CUGa-CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 90441 0.66 0.930856
Target:  5'- aGACGCGCGCgCagagGCGUcgGuggGCGGCg -3'
miRNA:   3'- aCUGCGUGCG-G----UGCAaaCugaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 4013 0.66 0.94091
Target:  5'- -aACGcCGCGCC-CGUcUGACUGCu-- -3'
miRNA:   3'- acUGC-GUGCGGuGCAaACUGACGcug -5'
6775 5' -53.8 NC_001875.2 + 105434 0.66 0.936009
Target:  5'- cGAuUGCAUGCCgGCGUUUG---GCGACa -3'
miRNA:   3'- aCU-GCGUGCGG-UGCAAACugaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 96452 0.66 0.936009
Target:  5'- -cGCGCGCGCCACG---GACaGCaGCg -3'
miRNA:   3'- acUGCGUGCGGUGCaaaCUGaCGcUG- -5'
6775 5' -53.8 NC_001875.2 + 30196 0.66 0.936009
Target:  5'- uUGGCGCcguuCGCCGCGac-GGCcguUGUGGCg -3'
miRNA:   3'- -ACUGCGu---GCGGUGCaaaCUG---ACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 46489 0.66 0.930856
Target:  5'- cGaACGC-CGCCACGgcgucGGCguucGCGGCg -3'
miRNA:   3'- aC-UGCGuGCGGUGCaaa--CUGa---CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 70181 0.66 0.949967
Target:  5'- uUGGCGCAgcgaGCCggGCGgc-GACgGCGACc -3'
miRNA:   3'- -ACUGCGUg---CGG--UGCaaaCUGaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 105547 0.66 0.938
Target:  5'- uUGGCGUgACGCCcacggGCGUguUUGACgccgucuacaucaugUGCGGCa -3'
miRNA:   3'- -ACUGCG-UGCGG-----UGCA--AACUG---------------ACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 81008 0.66 0.936009
Target:  5'- aGGCGCGCGaCGCGUU--GCUGCc-- -3'
miRNA:   3'- aCUGCGUGCgGUGCAAacUGACGcug -5'
6775 5' -53.8 NC_001875.2 + 94867 0.66 0.936009
Target:  5'- -cACGUACGCCaggcGCGUUUGAaaCUGCu-- -3'
miRNA:   3'- acUGCGUGCGG----UGCAAACU--GACGcug -5'
6775 5' -53.8 NC_001875.2 + 54457 0.66 0.949967
Target:  5'- aGcCGCgGCGCCGCacagcGugUGCGGCa -3'
miRNA:   3'- aCuGCG-UGCGGUGcaaa-CugACGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.