miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 5' -53.8 NC_001875.2 + 343 0.66 0.949967
Target:  5'- --cCGCGCGCCGCa---GACUGuCGAUc -3'
miRNA:   3'- acuGCGUGCGGUGcaaaCUGAC-GCUG- -5'
6775 5' -53.8 NC_001875.2 + 987 0.69 0.849835
Target:  5'- cGACGCuCGCCACGUUUcuaaucCUGUauGGCg -3'
miRNA:   3'- aCUGCGuGCGGUGCAAAcu----GACG--CUG- -5'
6775 5' -53.8 NC_001875.2 + 2290 0.66 0.94091
Target:  5'- gUGAUGCGCGCgCGCcg-UGGCcGCGcGCa -3'
miRNA:   3'- -ACUGCGUGCG-GUGcaaACUGaCGC-UG- -5'
6775 5' -53.8 NC_001875.2 + 2665 0.73 0.594216
Target:  5'- cGGCGCcggcgGCGCCugGggcaACUGCGGCg -3'
miRNA:   3'- aCUGCG-----UGCGGugCaaacUGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 3092 0.66 0.94091
Target:  5'- cGGCGUgcacGCGCCGgGgcgcGGCUcGCGGCg -3'
miRNA:   3'- aCUGCG----UGCGGUgCaaa-CUGA-CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 3539 0.68 0.88064
Target:  5'- uUGGCGCACGUCACc---GGCgccGUGGCg -3'
miRNA:   3'- -ACUGCGUGCGGUGcaaaCUGa--CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 3832 0.67 0.905831
Target:  5'- cGGCGCACGCCgGCGc--GGCcgcagccuccaacaUGUGACg -3'
miRNA:   3'- aCUGCGUGCGG-UGCaaaCUG--------------ACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 4013 0.66 0.94091
Target:  5'- -aACGcCGCGCC-CGUcUGACUGCu-- -3'
miRNA:   3'- acUGC-GUGCGGuGCAaACUGACGcug -5'
6775 5' -53.8 NC_001875.2 + 4437 0.69 0.849835
Target:  5'- cUGACGCGCGCCGCcagcacUUUGGCca-GGCu -3'
miRNA:   3'- -ACUGCGUGCGGUGc-----AAACUGacgCUG- -5'
6775 5' -53.8 NC_001875.2 + 4764 0.69 0.841596
Target:  5'- -aAUGCugGCCGCcgUUGGCcGCGGCu -3'
miRNA:   3'- acUGCGugCGGUGcaAACUGaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 5923 0.66 0.94091
Target:  5'- aUGGCGUuggguaGCGCCGCGcaggugGGC-GCGGCc -3'
miRNA:   3'- -ACUGCG------UGCGGUGCaaa---CUGaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 7009 0.7 0.797554
Target:  5'- cGugGCGCGCCA-GUUgcugGACguaaGCGAg -3'
miRNA:   3'- aCugCGUGCGGUgCAAa---CUGa---CGCUg -5'
6775 5' -53.8 NC_001875.2 + 7045 0.7 0.77877
Target:  5'- -cGCGCGCuugucgGCCugGUUccGCUGCGGCg -3'
miRNA:   3'- acUGCGUG------CGGugCAAacUGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 9161 0.74 0.552695
Target:  5'- cGGCGCACGCCAacuuUUUG-CUGCGGu -3'
miRNA:   3'- aCUGCGUGCGGUgc--AAACuGACGCUg -5'
6775 5' -53.8 NC_001875.2 + 10391 0.71 0.74958
Target:  5'- uUGaACGC-CGCCGCGccgUGGC-GCGGCa -3'
miRNA:   3'- -AC-UGCGuGCGGUGCaa-ACUGaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 10866 0.66 0.936009
Target:  5'- cGACGCGgugGCCGCGUcggUGgcGCUGCcGCg -3'
miRNA:   3'- aCUGCGUg--CGGUGCAa--AC--UGACGcUG- -5'
6775 5' -53.8 NC_001875.2 + 12442 0.7 0.797554
Target:  5'- --gUGCGCGCCGCGgugGACgccauucaGCGGCa -3'
miRNA:   3'- acuGCGUGCGGUGCaaaCUGa-------CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 12669 0.86 0.121205
Target:  5'- uUGACGCGCGCCGCGUUggccggGugUgGCGGCa -3'
miRNA:   3'- -ACUGCGUGCGGUGCAAa-----CugA-CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 15660 0.71 0.71941
Target:  5'- aGACGCACGCCACacauucGACacacgGCGAg -3'
miRNA:   3'- aCUGCGUGCGGUGcaaa--CUGa----CGCUg -5'
6775 5' -53.8 NC_001875.2 + 15699 0.77 0.407887
Target:  5'- aGACcUGC-CCAUGUUUGACUGCGGCg -3'
miRNA:   3'- aCUGcGUGcGGUGCAAACUGACGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.