miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 5' -53.8 NC_001875.2 + 117946 0.7 0.797554
Target:  5'- -uGCGCGcCGCCGCGUUUGGuuugGuCGACg -3'
miRNA:   3'- acUGCGU-GCGGUGCAAACUga--C-GCUG- -5'
6775 5' -53.8 NC_001875.2 + 10391 0.71 0.74958
Target:  5'- uUGaACGC-CGCCGCGccgUGGC-GCGGCa -3'
miRNA:   3'- -AC-UGCGuGCGGUGCaa-ACUGaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 44666 0.71 0.759432
Target:  5'- cUGGCGCACGCUGuCGUUggUGAUgcgcGUGACc -3'
miRNA:   3'- -ACUGCGUGCGGU-GCAA--ACUGa---CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 61942 0.7 0.769165
Target:  5'- ---aGCGCGCCGCGUUUGuCgacCGGCg -3'
miRNA:   3'- acugCGUGCGGUGCAAACuGac-GCUG- -5'
6775 5' -53.8 NC_001875.2 + 62241 0.7 0.775903
Target:  5'- gGACGCGCGCCGCGUaaagcgccacacguACUcCGACa -3'
miRNA:   3'- aCUGCGUGCGGUGCAaac-----------UGAcGCUG- -5'
6775 5' -53.8 NC_001875.2 + 18020 0.7 0.77877
Target:  5'- gGGCGCuACGCgCGCGacaUUGACgugcaaUGCGACa -3'
miRNA:   3'- aCUGCG-UGCG-GUGCa--AACUG------ACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 7045 0.7 0.77877
Target:  5'- -cGCGCGCuugucgGCCugGUUccGCUGCGGCg -3'
miRNA:   3'- acUGCGUG------CGGugCAAacUGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 7009 0.7 0.797554
Target:  5'- cGugGCGCGCCA-GUUgcugGACguaaGCGAg -3'
miRNA:   3'- aCugCGUGCGGUgCAAa---CUGa---CGCUg -5'
6775 5' -53.8 NC_001875.2 + 12442 0.7 0.797554
Target:  5'- --gUGCGCGCCGCGgugGACgccauucaGCGGCa -3'
miRNA:   3'- acuGCGUGCGGUGCaaaCUGa-------CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 100701 0.71 0.739619
Target:  5'- -cGCGCGCGgCGCGUUaagcaugcacauUG-CUGCGGCg -3'
miRNA:   3'- acUGCGUGCgGUGCAA------------ACuGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 69714 0.71 0.709183
Target:  5'- gGACGCGCGUCgcgcuaACGUUUGcACggaaucggGCGGCg -3'
miRNA:   3'- aCUGCGUGCGG------UGCAAAC-UGa-------CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 48375 0.72 0.698886
Target:  5'- --uCGCGCGCC-CGUccGACgcgGCGACa -3'
miRNA:   3'- acuGCGUGCGGuGCAaaCUGa--CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 15699 0.77 0.407887
Target:  5'- aGACcUGC-CCAUGUUUGACUGCGGCg -3'
miRNA:   3'- aCUGcGUGcGGUGCAAACUGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 37090 0.76 0.472763
Target:  5'- gGACGaCAcCGCCGCGUggGugUGCGGg -3'
miRNA:   3'- aCUGC-GU-GCGGUGCAaaCugACGCUg -5'
6775 5' -53.8 NC_001875.2 + 18163 0.73 0.604688
Target:  5'- cGGCGCGCGCgACGccgccACUGUGGCg -3'
miRNA:   3'- aCUGCGUGCGgUGCaaac-UGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 38219 0.73 0.615181
Target:  5'- gGACguGCACGUCAgGUUUGACgagGCGGa -3'
miRNA:   3'- aCUG--CGUGCGGUgCAAACUGa--CGCUg -5'
6775 5' -53.8 NC_001875.2 + 33479 0.72 0.657205
Target:  5'- aGugGCGCGCCGCGcgcugGGgUGCGcCa -3'
miRNA:   3'- aCugCGUGCGGUGCaaa--CUgACGCuG- -5'
6775 5' -53.8 NC_001875.2 + 101032 0.72 0.66768
Target:  5'- gGugGCACaGCCuacaGCGUUUGAgUgGCGGCu -3'
miRNA:   3'- aCugCGUG-CGG----UGCAAACUgA-CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 96837 0.72 0.678125
Target:  5'- -uAUGCGCGCCuuGUUUGACgGCGcGCg -3'
miRNA:   3'- acUGCGUGCGGugCAAACUGaCGC-UG- -5'
6775 5' -53.8 NC_001875.2 + 37588 0.72 0.688531
Target:  5'- cGGCGCgaGCGCCGCGgccGGCcgcacgGCGGCg -3'
miRNA:   3'- aCUGCG--UGCGGUGCaaaCUGa-----CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.