miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 5' -53.8 NC_001875.2 + 88907 1.1 0.003054
Target:  5'- cUGACGCACGCCACGUUUGACUGCGACg -3'
miRNA:   3'- -ACUGCGUGCGGUGCAAACUGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 12669 0.86 0.121205
Target:  5'- uUGACGCGCGCCGCGUUggccggGugUgGCGGCa -3'
miRNA:   3'- -ACUGCGUGCGGUGCAAa-----CugA-CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 62489 0.81 0.262506
Target:  5'- gGGCGCACGCCGC---UGACUGCG-Cg -3'
miRNA:   3'- aCUGCGUGCGGUGcaaACUGACGCuG- -5'
6775 5' -53.8 NC_001875.2 + 15699 0.77 0.407887
Target:  5'- aGACcUGC-CCAUGUUUGACUGCGGCg -3'
miRNA:   3'- aCUGcGUGcGGUGCAAACUGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 120770 0.76 0.463169
Target:  5'- gGGCGCGCGCCACGccaaACUGCuGCa -3'
miRNA:   3'- aCUGCGUGCGGUGCaaacUGACGcUG- -5'
6775 5' -53.8 NC_001875.2 + 37090 0.76 0.472763
Target:  5'- gGACGaCAcCGCCGCGUggGugUGCGGg -3'
miRNA:   3'- aCUGC-GU-GCGGUGCAaaCugACGCUg -5'
6775 5' -53.8 NC_001875.2 + 9161 0.74 0.552695
Target:  5'- cGGCGCACGCCAacuuUUUG-CUGCGGu -3'
miRNA:   3'- aCUGCGUGCGGUgc--AAACuGACGCUg -5'
6775 5' -53.8 NC_001875.2 + 41468 0.74 0.583773
Target:  5'- cGGCGCGCGCgGCGUgucuugugUGGuCUGCGcCg -3'
miRNA:   3'- aCUGCGUGCGgUGCAa-------ACU-GACGCuG- -5'
6775 5' -53.8 NC_001875.2 + 16096 0.74 0.587947
Target:  5'- cGGCGCACGCCgcuaggacauauugcACGUUUGccGCUGCa-- -3'
miRNA:   3'- aCUGCGUGCGG---------------UGCAAAC--UGACGcug -5'
6775 5' -53.8 NC_001875.2 + 2665 0.73 0.594216
Target:  5'- cGGCGCcggcgGCGCCugGggcaACUGCGGCg -3'
miRNA:   3'- aCUGCG-----UGCGGugCaaacUGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 129002 0.73 0.604688
Target:  5'- uUGGCGCaacACGCucuCAgGUggGACUGCGACu -3'
miRNA:   3'- -ACUGCG---UGCG---GUgCAaaCUGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 18163 0.73 0.604688
Target:  5'- cGGCGCGCGCgACGccgccACUGUGGCg -3'
miRNA:   3'- aCUGCGUGCGgUGCaaac-UGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 38219 0.73 0.615181
Target:  5'- gGACguGCACGUCAgGUUUGACgagGCGGa -3'
miRNA:   3'- aCUG--CGUGCGGUgCAAACUGa--CGCUg -5'
6775 5' -53.8 NC_001875.2 + 69252 0.73 0.615181
Target:  5'- cGGCGCGCuggGCCGCGgcucgagccgUGGCgGCGGCa -3'
miRNA:   3'- aCUGCGUG---CGGUGCaa--------ACUGaCGCUG- -5'
6775 5' -53.8 NC_001875.2 + 33479 0.72 0.657205
Target:  5'- aGugGCGCGCCGCGcgcugGGgUGCGcCa -3'
miRNA:   3'- aCugCGUGCGGUGCaaa--CUgACGCuG- -5'
6775 5' -53.8 NC_001875.2 + 101032 0.72 0.66768
Target:  5'- gGugGCACaGCCuacaGCGUUUGAgUgGCGGCu -3'
miRNA:   3'- aCugCGUG-CGG----UGCAAACUgA-CGCUG- -5'
6775 5' -53.8 NC_001875.2 + 52208 0.72 0.678125
Target:  5'- cGACuGCGCGCCgugcaaacuggACGcgcGACUGCGGCu -3'
miRNA:   3'- aCUG-CGUGCGG-----------UGCaaaCUGACGCUG- -5'
6775 5' -53.8 NC_001875.2 + 96837 0.72 0.678125
Target:  5'- -uAUGCGCGCCuuGUUUGACgGCGcGCg -3'
miRNA:   3'- acUGCGUGCGGugCAAACUGaCGC-UG- -5'
6775 5' -53.8 NC_001875.2 + 102001 0.72 0.678125
Target:  5'- cGGCGUGCGCgGCGgcggugGACUGCaGCg -3'
miRNA:   3'- aCUGCGUGCGgUGCaaa---CUGACGcUG- -5'
6775 5' -53.8 NC_001875.2 + 37588 0.72 0.688531
Target:  5'- cGGCGCgaGCGCCGCGgccGGCcgcacgGCGGCg -3'
miRNA:   3'- aCUGCG--UGCGGUGCaaaCUGa-----CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.