miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6777 3' -60.9 NC_001875.2 + 68693 0.66 0.616933
Target:  5'- uGCGUGCccguggacccgUGCGCCGGcCGcGCGCCcgGCc -3'
miRNA:   3'- -CGCGUG-----------ACGCGGCU-GC-CGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 29874 0.66 0.616933
Target:  5'- aCGC-CUGCGUCGcguucgccacCGGCGCCUuuucucugggccUGCUg -3'
miRNA:   3'- cGCGuGACGCGGCu---------GCCGCGGA------------ACGA- -5'
6777 3' -60.9 NC_001875.2 + 41839 0.66 0.647049
Target:  5'- cGCGUccaguuGCcGCGCCG-CGGCGgCgaGCUg -3'
miRNA:   3'- -CGCG------UGaCGCGGCuGCCGCgGaaCGA- -5'
6777 3' -60.9 NC_001875.2 + 71667 0.66 0.647049
Target:  5'- aGCGCuguauUUGUGCCGccgacacaauGCGGCGUggUGCa -3'
miRNA:   3'- -CGCGu----GACGCGGC----------UGCCGCGgaACGa -5'
6777 3' -60.9 NC_001875.2 + 23781 0.66 0.616933
Target:  5'- aGCGCACguugcccagGuCGCCGacgugucgcuccGCGGCGUCggGCg -3'
miRNA:   3'- -CGCGUGa--------C-GCGGC------------UGCCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 31602 0.66 0.637012
Target:  5'- -gGCGCcGUGCCGugGGCGgaCCacaUGCg -3'
miRNA:   3'- cgCGUGaCGCGGCugCCGC--GGa--ACGa -5'
6777 3' -60.9 NC_001875.2 + 110164 0.66 0.647049
Target:  5'- uCGCGCU-CGUCgGGCGGCGUCgcacUGCg -3'
miRNA:   3'- cGCGUGAcGCGG-CUGCCGCGGa---ACGa -5'
6777 3' -60.9 NC_001875.2 + 45228 0.66 0.657075
Target:  5'- cGCGCGCgaacagGCGgCG-CGuCGCCUUGUc -3'
miRNA:   3'- -CGCGUGa-----CGCgGCuGCcGCGGAACGa -5'
6777 3' -60.9 NC_001875.2 + 100038 0.66 0.630987
Target:  5'- uGCGCGCUgGUuuugcuguuuguggaGCUGACGGUGCU--GCUg -3'
miRNA:   3'- -CGCGUGA-CG---------------CGGCUGCCGCGGaaCGA- -5'
6777 3' -60.9 NC_001875.2 + 50018 0.66 0.626971
Target:  5'- gGCGCGCgugGuCGCCgGGCGGCGag--GCg -3'
miRNA:   3'- -CGCGUGa--C-GCGG-CUGCCGCggaaCGa -5'
6777 3' -60.9 NC_001875.2 + 41924 0.66 0.616933
Target:  5'- cGCGgAC-GCGCCGcccuuuauaugcGCGGCGCCacGUa -3'
miRNA:   3'- -CGCgUGaCGCGGC------------UGCCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 129167 0.66 0.632995
Target:  5'- gGCGC-CgcaguugccccagGCGCCGcCGGCGCC--GCa -3'
miRNA:   3'- -CGCGuGa------------CGCGGCuGCCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 62431 0.66 0.626971
Target:  5'- uUGCGCUGCGCCGGCuGCaagGUCgugaccacgUGCg -3'
miRNA:   3'- cGCGUGACGCGGCUGcCG---CGGa--------ACGa -5'
6777 3' -60.9 NC_001875.2 + 84168 0.66 0.677062
Target:  5'- aCGCGCggcGCGCCG-CGGcCGCgUccgUGCg -3'
miRNA:   3'- cGCGUGa--CGCGGCuGCC-GCGgA---ACGa -5'
6777 3' -60.9 NC_001875.2 + 43316 0.66 0.647049
Target:  5'- gGCGCGC-GCGCgGGuCGGCGUggUUGCc -3'
miRNA:   3'- -CGCGUGaCGCGgCU-GCCGCGg-AACGa -5'
6777 3' -60.9 NC_001875.2 + 78309 0.66 0.626971
Target:  5'- uCGCGCUgguaGCGCaCGACGuGCGCCa---- -3'
miRNA:   3'- cGCGUGA----CGCG-GCUGC-CGCGGaacga -5'
6777 3' -60.9 NC_001875.2 + 37020 0.66 0.616933
Target:  5'- aGCGCacGCUGCaauuuaugGCCGugcACGGCGCg-UGCa -3'
miRNA:   3'- -CGCG--UGACG--------CGGC---UGCCGCGgaACGa -5'
6777 3' -60.9 NC_001875.2 + 32124 0.66 0.644039
Target:  5'- cGCGCACUugcgaGCGCCGcauagcgcucaacgGCGGCGaagaCgcGCUg -3'
miRNA:   3'- -CGCGUGA-----CGCGGC--------------UGCCGCg---GaaCGA- -5'
6777 3' -60.9 NC_001875.2 + 40074 0.66 0.623959
Target:  5'- cCGCACUacgacgaggccgcgGCGCUGACG-CGCCacugGCUg -3'
miRNA:   3'- cGCGUGA--------------CGCGGCUGCcGCGGaa--CGA- -5'
6777 3' -60.9 NC_001875.2 + 57340 0.66 0.640024
Target:  5'- gGCaGCGCUGCGCgCGGCGaaaccgcaaguacGUGCCUucaaucacgggcgucUGCa -3'
miRNA:   3'- -CG-CGUGACGCG-GCUGC-------------CGCGGA---------------ACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.