miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6777 3' -60.9 NC_001875.2 + 1333 0.67 0.55718
Target:  5'- -aGCGgUGCGUCaGCGGCGaCCcUGCUu -3'
miRNA:   3'- cgCGUgACGCGGcUGCCGC-GGaACGA- -5'
6777 3' -60.9 NC_001875.2 + 1393 0.71 0.360349
Target:  5'- -aGCGgUGCGUCaGCGGCGCCcuggugUGCUa -3'
miRNA:   3'- cgCGUgACGCGGcUGCCGCGGa-----ACGA- -5'
6777 3' -60.9 NC_001875.2 + 1429 0.67 0.55718
Target:  5'- -aGCGgUGCGUCaGCGGCGaCCcUGCUu -3'
miRNA:   3'- cgCGUgACGCGGcUGCCGC-GGaACGA- -5'
6777 3' -60.9 NC_001875.2 + 1885 0.69 0.48978
Target:  5'- -aGCAgUGCGUCaGCGGCGaCCcUGCUu -3'
miRNA:   3'- cgCGUgACGCGGcUGCCGC-GGaACGA- -5'
6777 3' -60.9 NC_001875.2 + 2294 0.68 0.547359
Target:  5'- uGCGCGC-GCGCCGugGccGCGCgcaGCUc -3'
miRNA:   3'- -CGCGUGaCGCGGCugC--CGCGgaaCGA- -5'
6777 3' -60.9 NC_001875.2 + 2424 0.68 0.518253
Target:  5'- cGCGCACcGUGCUcAUGGUGCUUaGCUc -3'
miRNA:   3'- -CGCGUGaCGCGGcUGCCGCGGAaCGA- -5'
6777 3' -60.9 NC_001875.2 + 2662 0.78 0.125801
Target:  5'- uUGCg--GCGCCGGCGGCGCCUgggGCa -3'
miRNA:   3'- cGCGugaCGCGGCUGCCGCGGAa--CGa -5'
6777 3' -60.9 NC_001875.2 + 3095 0.69 0.48978
Target:  5'- cGUGCAC-GCGCCGG-GGCGCg--GCUc -3'
miRNA:   3'- -CGCGUGaCGCGGCUgCCGCGgaaCGA- -5'
6777 3' -60.9 NC_001875.2 + 3141 0.7 0.392487
Target:  5'- aGCcCGCUGCGCgGacGCGGCGUCggGCg -3'
miRNA:   3'- -CGcGUGACGCGgC--UGCCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 3532 0.71 0.368209
Target:  5'- uGCGCAUuugGCGCaCGucacCGGCGCCgugGCg -3'
miRNA:   3'- -CGCGUGa--CGCG-GCu---GCCGCGGaa-CGa -5'
6777 3' -60.9 NC_001875.2 + 5323 0.66 0.667082
Target:  5'- uGCGCGCUaccugcuCGCCGaguGCGGgGCggUGCUg -3'
miRNA:   3'- -CGCGUGAc------GCGGC---UGCCgCGgaACGA- -5'
6777 3' -60.9 NC_001875.2 + 5908 0.66 0.677062
Target:  5'- uCGUACaGCGCCGGCauGGCGUUggGUa -3'
miRNA:   3'- cGCGUGaCGCGGCUG--CCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 6949 0.68 0.547359
Target:  5'- cGUGCG-UGCGCCGcgacaucgccACGGCGCgcUGCUu -3'
miRNA:   3'- -CGCGUgACGCGGC----------UGCCGCGgaACGA- -5'
6777 3' -60.9 NC_001875.2 + 7003 0.71 0.376186
Target:  5'- gGUGUGCUGCugGCCGGCGGCGCgUa--- -3'
miRNA:   3'- -CGCGUGACG--CGGCUGCCGCGgAacga -5'
6777 3' -60.9 NC_001875.2 + 7101 0.66 0.677062
Target:  5'- cGUGCGCggcucggacgGCggcgaaacgGCCGACGcGUGCCUguUGCUu -3'
miRNA:   3'- -CGCGUGa---------CG---------CGGCUGC-CGCGGA--ACGA- -5'
6777 3' -60.9 NC_001875.2 + 7106 0.69 0.487907
Target:  5'- cGCGCGCUG-GCCGACauugaccgccacGCGCCgcUUGCc -3'
miRNA:   3'- -CGCGUGACgCGGCUGc-----------CGCGG--AACGa -5'
6777 3' -60.9 NC_001875.2 + 9708 0.66 0.616933
Target:  5'- uCGUGC-GCGCCGGCcGCGCCgcGCc -3'
miRNA:   3'- cGCGUGaCGCGGCUGcCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 9803 0.66 0.677062
Target:  5'- uUGCACgGCGCCauCGGCGgCU-GCUa -3'
miRNA:   3'- cGCGUGaCGCGGcuGCCGCgGAaCGA- -5'
6777 3' -60.9 NC_001875.2 + 11084 0.7 0.399134
Target:  5'- gGCGCGCgcccuggacacgGcCGCCGucuCGGCGCCgcaGCUg -3'
miRNA:   3'- -CGCGUGa-----------C-GCGGCu--GCCGCGGaa-CGA- -5'
6777 3' -60.9 NC_001875.2 + 11950 0.8 0.094779
Target:  5'- uGUGCGC-GCGaCCGGCGGCGCgUUGCa -3'
miRNA:   3'- -CGCGUGaCGC-GGCUGCCGCGgAACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.