miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6777 3' -60.9 NC_001875.2 + 74631 0.72 0.330092
Target:  5'- gGCuGCACUGCGCUGuCGGCagcgugccaugGCCgggGCUg -3'
miRNA:   3'- -CG-CGUGACGCGGCuGCCG-----------CGGaa-CGA- -5'
6777 3' -60.9 NC_001875.2 + 39305 0.75 0.222132
Target:  5'- uGCGCGCUGCacaccguGCCGGCGGCGUgc-GCg -3'
miRNA:   3'- -CGCGUGACG-------CGGCUGCCGCGgaaCGa -5'
6777 3' -60.9 NC_001875.2 + 111051 0.74 0.23581
Target:  5'- cGCGCACUGCGCguCGACGGCuucuacguggacgacGCCg-GCg -3'
miRNA:   3'- -CGCGUGACGCG--GCUGCCG---------------CGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 32797 0.73 0.262203
Target:  5'- cGgGCGCcGCGCCGgcaagcucggcgaACGGCGCCgcUUGCg -3'
miRNA:   3'- -CgCGUGaCGCGGC-------------UGCCGCGG--AACGa -5'
6777 3' -60.9 NC_001875.2 + 69198 0.73 0.262816
Target:  5'- cGUGCGCgGCGCCGACGGCcaGUacgCUUGUUc -3'
miRNA:   3'- -CGCGUGaCGCGGCUGCCG--CG---GAACGA- -5'
6777 3' -60.9 NC_001875.2 + 30106 0.73 0.275321
Target:  5'- uGCGCGCUGUacGCCguGACGGUGCUgaGCa -3'
miRNA:   3'- -CGCGUGACG--CGG--CUGCCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 73711 0.73 0.28175
Target:  5'- gGUGCGCUGCGCCGGCaGaGCGCUa---- -3'
miRNA:   3'- -CGCGUGACGCGGCUG-C-CGCGGaacga -5'
6777 3' -60.9 NC_001875.2 + 69237 0.73 0.294964
Target:  5'- cGCGCGCUGUGCCGAcuugcccgaCGGCacggGCCgguuaaUGCa -3'
miRNA:   3'- -CGCGUGACGCGGCU---------GCCG----CGGa-----ACGa -5'
6777 3' -60.9 NC_001875.2 + 48518 0.72 0.322826
Target:  5'- gGCGCGCcGC-CCGGCGcGCGCCccGCg -3'
miRNA:   3'- -CGCGUGaCGcGGCUGC-CGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 90386 0.75 0.207118
Target:  5'- cCGCGC-GCGCCGcaacCGGCGCCUgUGCg -3'
miRNA:   3'- cGCGUGaCGCGGCu---GCCGCGGA-ACGa -5'
6777 3' -60.9 NC_001875.2 + 49854 0.75 0.207118
Target:  5'- uGCGCGCcG-GCCGGC-GCGCCUUGCc -3'
miRNA:   3'- -CGCGUGaCgCGGCUGcCGCGGAACGa -5'
6777 3' -60.9 NC_001875.2 + 39654 0.75 0.207118
Target:  5'- cGCGCGCgaguuUGgGCCGGCGGCGCgcgGCg -3'
miRNA:   3'- -CGCGUG-----ACgCGGCUGCCGCGgaaCGa -5'
6777 3' -60.9 NC_001875.2 + 11950 0.8 0.094779
Target:  5'- uGUGCGC-GCGaCCGGCGGCGCgUUGCa -3'
miRNA:   3'- -CGCGUGaCGC-GGCUGCCGCGgAACGa -5'
6777 3' -60.9 NC_001875.2 + 18572 0.79 0.119535
Target:  5'- aGCGCGCuuUGCGUCGuuGGCGCCUauUGCg -3'
miRNA:   3'- -CGCGUG--ACGCGGCugCCGCGGA--ACGa -5'
6777 3' -60.9 NC_001875.2 + 81304 0.78 0.138203
Target:  5'- cGCGCGC--CGCCGGCGGCGCCUccuccucgucaucgUGCc -3'
miRNA:   3'- -CGCGUGacGCGGCUGCCGCGGA--------------ACGa -5'
6777 3' -60.9 NC_001875.2 + 98035 0.78 0.139256
Target:  5'- cGCGCGCcgUGCGCCGACGG-GCaagUGCg -3'
miRNA:   3'- -CGCGUG--ACGCGGCUGCCgCGga-ACGa -5'
6777 3' -60.9 NC_001875.2 + 39065 0.77 0.142821
Target:  5'- aGCGCAUggccauugUGCGCCG-CGGCGUCgUGCUg -3'
miRNA:   3'- -CGCGUG--------ACGCGGCuGCCGCGGaACGA- -5'
6777 3' -60.9 NC_001875.2 + 36412 0.76 0.192518
Target:  5'- cGCGCACgcuggccgGCGCCG-CGGUGUCggGCUg -3'
miRNA:   3'- -CGCGUGa-------CGCGGCuGCCGCGGaaCGA- -5'
6777 3' -60.9 NC_001875.2 + 71917 0.75 0.202148
Target:  5'- gGCGUGC-GCGUCGGCGaGCGCCUUGa- -3'
miRNA:   3'- -CGCGUGaCGCGGCUGC-CGCGGAACga -5'
6777 3' -60.9 NC_001875.2 + 19120 0.75 0.207118
Target:  5'- uGCGCGCgacGCGCCuaccacGGCGGCGCCgucaGCg -3'
miRNA:   3'- -CGCGUGa--CGCGG------CUGCCGCGGaa--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.