miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6777 3' -60.9 NC_001875.2 + 87388 1.09 0.000816
Target:  5'- gGCGCACUGCGCCGACGGCGCCUUGCUg -3'
miRNA:   3'- -CGCGUGACGCGGCUGCCGCGGAACGA- -5'
6777 3' -60.9 NC_001875.2 + 111799 0.84 0.053156
Target:  5'- gGUGCAC-GCgGCCGACGGCGCCUgGCUg -3'
miRNA:   3'- -CGCGUGaCG-CGGCUGCCGCGGAaCGA- -5'
6777 3' -60.9 NC_001875.2 + 61613 0.81 0.076923
Target:  5'- gGCGCuucggGCUGUGUCGGCGGCGCCUcggGCg -3'
miRNA:   3'- -CGCG-----UGACGCGGCUGCCGCGGAa--CGa -5'
6777 3' -60.9 NC_001875.2 + 11950 0.8 0.094779
Target:  5'- uGUGCGC-GCGaCCGGCGGCGCgUUGCa -3'
miRNA:   3'- -CGCGUGaCGC-GGCUGCCGCGgAACGa -5'
6777 3' -60.9 NC_001875.2 + 119328 0.79 0.116511
Target:  5'- cCGCACUGCGCCccaGGCGCUUUGUa -3'
miRNA:   3'- cGCGUGACGCGGcugCCGCGGAACGa -5'
6777 3' -60.9 NC_001875.2 + 18572 0.79 0.119535
Target:  5'- aGCGCGCuuUGCGUCGuuGGCGCCUauUGCg -3'
miRNA:   3'- -CGCGUG--ACGCGGCugCCGCGGA--ACGa -5'
6777 3' -60.9 NC_001875.2 + 2662 0.78 0.125801
Target:  5'- uUGCg--GCGCCGGCGGCGCCUgggGCa -3'
miRNA:   3'- cGCGugaCGCGGCUGCCGCGGAa--CGa -5'
6777 3' -60.9 NC_001875.2 + 89268 0.78 0.125801
Target:  5'- cGCGCGCgUGCGCCGACcuGGCGCg--GCUg -3'
miRNA:   3'- -CGCGUG-ACGCGGCUG--CCGCGgaaCGA- -5'
6777 3' -60.9 NC_001875.2 + 81304 0.78 0.138203
Target:  5'- cGCGCGC--CGCCGGCGGCGCCUccuccucgucaucgUGCc -3'
miRNA:   3'- -CGCGUGacGCGGCUGCCGCGGA--------------ACGa -5'
6777 3' -60.9 NC_001875.2 + 98035 0.78 0.139256
Target:  5'- cGCGCGCcgUGCGCCGACGG-GCaagUGCg -3'
miRNA:   3'- -CGCGUG--ACGCGGCUGCCgCGga-ACGa -5'
6777 3' -60.9 NC_001875.2 + 62640 0.78 0.139256
Target:  5'- aGCGUACUG-GCCGuCGGCGCCgcGCa -3'
miRNA:   3'- -CGCGUGACgCGGCuGCCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 39065 0.77 0.142821
Target:  5'- aGCGCAUggccauugUGCGCCG-CGGCGUCgUGCUg -3'
miRNA:   3'- -CGCGUG--------ACGCGGCuGCCGCGGaACGA- -5'
6777 3' -60.9 NC_001875.2 + 123338 0.77 0.161921
Target:  5'- aGUGCGCgGCGCCcacacgGACGGCGCCcgGCg -3'
miRNA:   3'- -CGCGUGaCGCGG------CUGCCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 41449 0.77 0.161921
Target:  5'- cGCGCACagGCGCCGguuGCGGCGCgCgcgGCg -3'
miRNA:   3'- -CGCGUGa-CGCGGC---UGCCGCG-Gaa-CGa -5'
6777 3' -60.9 NC_001875.2 + 65788 0.76 0.178827
Target:  5'- cGCGCGCgGCGUCGgcgcGCGGUGCCU-GCg -3'
miRNA:   3'- -CGCGUGaCGCGGC----UGCCGCGGAaCGa -5'
6777 3' -60.9 NC_001875.2 + 36412 0.76 0.192518
Target:  5'- cGCGCACgcuggccgGCGCCG-CGGUGUCggGCUg -3'
miRNA:   3'- -CGCGUGa-------CGCGGCuGCCGCGGaaCGA- -5'
6777 3' -60.9 NC_001875.2 + 98604 0.75 0.197282
Target:  5'- -aGCGCcGCGCCGAaaCGGCGCCcgGCg -3'
miRNA:   3'- cgCGUGaCGCGGCU--GCCGCGGaaCGa -5'
6777 3' -60.9 NC_001875.2 + 77076 0.75 0.202148
Target:  5'- uGCGCcguccuguUUGCGCUGGCGGUGCCggcggUGCg -3'
miRNA:   3'- -CGCGu-------GACGCGGCUGCCGCGGa----ACGa -5'
6777 3' -60.9 NC_001875.2 + 71917 0.75 0.202148
Target:  5'- gGCGUGC-GCGUCGGCGaGCGCCUUGa- -3'
miRNA:   3'- -CGCGUGaCGCGGCUGC-CGCGGAACga -5'
6777 3' -60.9 NC_001875.2 + 19120 0.75 0.207118
Target:  5'- uGCGCGCgacGCGCCuaccacGGCGGCGCCgucaGCg -3'
miRNA:   3'- -CGCGUGa--CGCGG------CUGCCGCGGaa--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.