Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6777 | 5' | -54.8 | NC_001875.2 | + | 42453 | 0.66 | 0.905479 |
Target: 5'- gUCAGCGGCCGCUgCgGCgAGCcacGCAGc -3' miRNA: 3'- -AGUUGCUGGCGG-GgUGgUUGaa-CGUC- -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 104033 | 0.66 | 0.896385 |
Target: 5'- cCAACGGCCaaugccgcaucaaCCCCaACCGAUUUGUGGu -3' miRNA: 3'- aGUUGCUGGc------------GGGG-UGGUUGAACGUC- -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 31692 | 0.66 | 0.899032 |
Target: 5'- gCGugGACCGCCgcuugcgcgCCGCCGGC--GCAu -3' miRNA: 3'- aGUugCUGGCGG---------GGUGGUUGaaCGUc -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 92723 | 0.66 | 0.899032 |
Target: 5'- -gAGCGcGCUG-CCCGCCAGCUaaccggUGCAGc -3' miRNA: 3'- agUUGC-UGGCgGGGUGGUUGA------ACGUC- -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 43601 | 0.66 | 0.899032 |
Target: 5'- gCAGCGGCgGCgCgCGCC-GCUUGCGc -3' miRNA: 3'- aGUUGCUGgCGgG-GUGGuUGAACGUc -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 39101 | 0.66 | 0.92335 |
Target: 5'- cCAACGcGCUGCUgCACCGguuaGCUgGCGGg -3' miRNA: 3'- aGUUGC-UGGCGGgGUGGU----UGAaCGUC- -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 40128 | 0.66 | 0.905479 |
Target: 5'- cCGACGGCCGUCaCCuCCAuggGCUgGCAc -3' miRNA: 3'- aGUUGCUGGCGG-GGuGGU---UGAaCGUc -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 9944 | 0.66 | 0.911682 |
Target: 5'- cUAGCGguGCUGCCCaCGCCGGCUUaUAGc -3' miRNA: 3'- aGUUGC--UGGCGGG-GUGGUUGAAcGUC- -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 90026 | 0.66 | 0.91764 |
Target: 5'- cUCAAgaGCuCGCCgCgCGCCAugUUGCAGc -3' miRNA: 3'- -AGUUgcUG-GCGG-G-GUGGUugAACGUC- -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 88522 | 0.66 | 0.927199 |
Target: 5'- aUCAGCGGCaCGCCCgccgcggcgucguuUAUUAACUuguUGCGGc -3' miRNA: 3'- -AGUUGCUG-GCGGG--------------GUGGUUGA---ACGUC- -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 121439 | 0.66 | 0.899032 |
Target: 5'- gCAGCGGgUGCCgCGCCAcgGCgcgGCGGc -3' miRNA: 3'- aGUUGCUgGCGGgGUGGU--UGaa-CGUC- -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 63597 | 0.66 | 0.92335 |
Target: 5'- --uACGGCCaGCUCCACgAuuuCUUGCAa -3' miRNA: 3'- aguUGCUGG-CGGGGUGgUu--GAACGUc -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 113734 | 0.66 | 0.91764 |
Target: 5'- cCGAUGAgCGaCuCCCACCAGCgaaacgaGCAGc -3' miRNA: 3'- aGUUGCUgGC-G-GGGUGGUUGaa-----CGUC- -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 114741 | 0.66 | 0.905479 |
Target: 5'- --uGCGGCCGCCaguggCGCgCGGCUUGCc- -3' miRNA: 3'- aguUGCUGGCGGg----GUG-GUUGAACGuc -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 88287 | 0.66 | 0.928811 |
Target: 5'- -aGACG-CCGCCCCGCCAcgUUcGCc- -3' miRNA: 3'- agUUGCuGGCGGGGUGGUugAA-CGuc -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 41541 | 0.66 | 0.899032 |
Target: 5'- ---gUGACCGaCgCCugCAACUUGCGc -3' miRNA: 3'- aguuGCUGGC-GgGGugGUUGAACGUc -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 48837 | 0.66 | 0.928811 |
Target: 5'- aCGGCG-CCGCuucaagCCCGCCGGCgacgaGCGGc -3' miRNA: 3'- aGUUGCuGGCG------GGGUGGUUGaa---CGUC- -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 7336 | 0.66 | 0.899032 |
Target: 5'- gUCAGCGACCugcuGCCCgGCCAAaccaucaugUGUAu -3' miRNA: 3'- -AGUUGCUGG----CGGGgUGGUUga-------ACGUc -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 21679 | 0.66 | 0.899032 |
Target: 5'- gCGACG-CCGCCCgACgAGCgcgacGCGGu -3' miRNA: 3'- aGUUGCuGGCGGGgUGgUUGaa---CGUC- -5' |
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6777 | 5' | -54.8 | NC_001875.2 | + | 131007 | 0.66 | 0.904845 |
Target: 5'- -gGACGugcugcaccACCGCCCCACCAccagcaaGCUguuucUGCGc -3' miRNA: 3'- agUUGC---------UGGCGGGGUGGU-------UGA-----ACGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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