miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6777 5' -54.8 NC_001875.2 + 87422 1.09 0.003171
Target:  5'- uUCAACGACCGCCCCACCAACUUGCAGu -3'
miRNA:   3'- -AGUUGCUGGCGGGGUGGUUGAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 6518 0.79 0.294981
Target:  5'- aCAACG-CCGCCCaacaugaguuucuuUACCAACUUGCGGc -3'
miRNA:   3'- aGUUGCuGGCGGG--------------GUGGUUGAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 125528 0.79 0.297084
Target:  5'- uUCGGCG-CUGCCCCACCAuGCUuguUGCGGu -3'
miRNA:   3'- -AGUUGCuGGCGGGGUGGU-UGA---ACGUC- -5'
6777 5' -54.8 NC_001875.2 + 16373 0.78 0.311403
Target:  5'- cCAAUGGCCGCgCCCGCUAGCUcaacgcgguaggUGCGGu -3'
miRNA:   3'- aGUUGCUGGCG-GGGUGGUUGA------------ACGUC- -5'
6777 5' -54.8 NC_001875.2 + 74156 0.77 0.365594
Target:  5'- gCGGCGcCCGCCgCCGCCAGCUUGgAc -3'
miRNA:   3'- aGUUGCuGGCGG-GGUGGUUGAACgUc -5'
6777 5' -54.8 NC_001875.2 + 65523 0.75 0.482135
Target:  5'- aCGGCGGCCGCCCaCGCCAucaACUcGCc- -3'
miRNA:   3'- aGUUGCUGGCGGG-GUGGU---UGAaCGuc -5'
6777 5' -54.8 NC_001875.2 + 102560 0.74 0.511541
Target:  5'- cCAcACGACCgcGCCCCGCCGGCgcggucgGCGGc -3'
miRNA:   3'- aGU-UGCUGG--CGGGGUGGUUGaa-----CGUC- -5'
6777 5' -54.8 NC_001875.2 + 49070 0.73 0.541665
Target:  5'- gUCGACGACCuCCCCAgCAACaacuUUGCGu -3'
miRNA:   3'- -AGUUGCUGGcGGGGUgGUUG----AACGUc -5'
6777 5' -54.8 NC_001875.2 + 126505 0.73 0.562073
Target:  5'- cCAGC-ACCGCCCCGCacuCGGCgaGCAGg -3'
miRNA:   3'- aGUUGcUGGCGGGGUG---GUUGaaCGUC- -5'
6777 5' -54.8 NC_001875.2 + 37879 0.72 0.593047
Target:  5'- aCGGCgGGCCGCgCCAgCGGCUUGCuGg -3'
miRNA:   3'- aGUUG-CUGGCGgGGUgGUUGAACGuC- -5'
6777 5' -54.8 NC_001875.2 + 6229 0.72 0.603441
Target:  5'- gUCGGCGacacgcccaGCCGCUCCACCAugUaGCGa -3'
miRNA:   3'- -AGUUGC---------UGGCGGGGUGGUugAaCGUc -5'
6777 5' -54.8 NC_001875.2 + 126639 0.72 0.603441
Target:  5'- aUCAGCGuuAUCGCCCCACUAuca-GCAGg -3'
miRNA:   3'- -AGUUGC--UGGCGGGGUGGUugaaCGUC- -5'
6777 5' -54.8 NC_001875.2 + 128096 0.72 0.634724
Target:  5'- aUUGugGACCGCaUUCACCG-CUUGCAGc -3'
miRNA:   3'- -AGUugCUGGCG-GGGUGGUuGAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 52054 0.72 0.634724
Target:  5'- cCGACGAcCCGCCCUACCuGCccgaaGCGGu -3'
miRNA:   3'- aGUUGCU-GGCGGGGUGGuUGaa---CGUC- -5'
6777 5' -54.8 NC_001875.2 + 49594 0.72 0.645158
Target:  5'- cCGACGAgCGCUaCCACCAGCgcGCAa -3'
miRNA:   3'- aGUUGCUgGCGG-GGUGGUUGaaCGUc -5'
6777 5' -54.8 NC_001875.2 + 52039 0.72 0.645158
Target:  5'- gUCAACGACCGCgaCACCGACUg---- -3'
miRNA:   3'- -AGUUGCUGGCGggGUGGUUGAacguc -5'
6777 5' -54.8 NC_001875.2 + 47865 0.71 0.665986
Target:  5'- aUUGugGACCGCCUguuUAUCGACUUGguGu -3'
miRNA:   3'- -AGUugCUGGCGGG---GUGGUUGAACguC- -5'
6777 5' -54.8 NC_001875.2 + 34692 0.71 0.670141
Target:  5'- gUCAAgGGCCGCCCCaacggguucgccauaGCCGAgUUugGCAGc -3'
miRNA:   3'- -AGUUgCUGGCGGGG---------------UGGUUgAA--CGUC- -5'
6777 5' -54.8 NC_001875.2 + 6840 0.71 0.676362
Target:  5'- aCAACGugC-CCgaCGCCAACUUGCAc -3'
miRNA:   3'- aGUUGCugGcGGg-GUGGUUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 3875 0.71 0.676362
Target:  5'- gCAGC-ACCGCgCCGCCAaGCUggGCAGg -3'
miRNA:   3'- aGUUGcUGGCGgGGUGGU-UGAa-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.