miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6777 5' -54.8 NC_001875.2 + 77701 0.68 0.830727
Target:  5'- --cGCGACUGCCgCCGuCC-GCUUGCAc -3'
miRNA:   3'- aguUGCUGGCGG-GGU-GGuUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 81558 0.69 0.785903
Target:  5'- gCAGCGAUCGCgCUCGCgGugUUGCu- -3'
miRNA:   3'- aGUUGCUGGCG-GGGUGgUugAACGuc -5'
6777 5' -54.8 NC_001875.2 + 128134 0.69 0.785903
Target:  5'- cUCggUGGCCuCCCCACCAccaACUuuuuUGCAc -3'
miRNA:   3'- -AGuuGCUGGcGGGGUGGU---UGA----ACGUc -5'
6777 5' -54.8 NC_001875.2 + 9606 0.69 0.785903
Target:  5'- --cGCGGCCGCCCUccuCCAGCggcuucacgUGCAc -3'
miRNA:   3'- aguUGCUGGCGGGGu--GGUUGa--------ACGUc -5'
6777 5' -54.8 NC_001875.2 + 100643 0.69 0.79427
Target:  5'- gCAGCGugCGCgucagccCCCACCAAUUccaGCGGc -3'
miRNA:   3'- aGUUGCugGCG-------GGGUGGUUGAa--CGUC- -5'
6777 5' -54.8 NC_001875.2 + 110759 0.69 0.804327
Target:  5'- gCGGCGACCGCCgCCGCgcGCUuuUGCc- -3'
miRNA:   3'- aGUUGCUGGCGG-GGUGguUGA--ACGuc -5'
6777 5' -54.8 NC_001875.2 + 54575 0.68 0.813301
Target:  5'- gCGGCGGCCGCUUCGCCcg---GCGGc -3'
miRNA:   3'- aGUUGCUGGCGGGGUGGuugaaCGUC- -5'
6777 5' -54.8 NC_001875.2 + 65727 0.68 0.822104
Target:  5'- gCGGCG-CCGCCUCGCCGcccGCcgcGCGGg -3'
miRNA:   3'- aGUUGCuGGCGGGGUGGU---UGaa-CGUC- -5'
6777 5' -54.8 NC_001875.2 + 131173 0.68 0.822104
Target:  5'- -uGGCGACCGCaCC-CCGGCguguUUGCAGu -3'
miRNA:   3'- agUUGCUGGCGgGGuGGUUG----AACGUC- -5'
6777 5' -54.8 NC_001875.2 + 41531 0.7 0.757212
Target:  5'- cUCAACGACaGUUUgGCCAAUUUGCAa -3'
miRNA:   3'- -AGUUGCUGgCGGGgUGGUUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 43329 0.7 0.747406
Target:  5'- gUCGGCGugguuGCCGCCgCgCACCAcguACUUGCGc -3'
miRNA:   3'- -AGUUGC-----UGGCGG-G-GUGGU---UGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 32200 0.7 0.747406
Target:  5'- gCAGCaaGugUGCCCCuuCAACUUGCGc -3'
miRNA:   3'- aGUUG--CugGCGGGGugGUUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 37879 0.72 0.593047
Target:  5'- aCGGCgGGCCGCgCCAgCGGCUUGCuGg -3'
miRNA:   3'- aGUUG-CUGGCGgGGUgGUUGAACGuC- -5'
6777 5' -54.8 NC_001875.2 + 6229 0.72 0.603441
Target:  5'- gUCGGCGacacgcccaGCCGCUCCACCAugUaGCGa -3'
miRNA:   3'- -AGUUGC---------UGGCGGGGUGGUugAaCGUc -5'
6777 5' -54.8 NC_001875.2 + 126639 0.72 0.603441
Target:  5'- aUCAGCGuuAUCGCCCCACUAuca-GCAGg -3'
miRNA:   3'- -AGUUGC--UGGCGGGGUGGUugaaCGUC- -5'
6777 5' -54.8 NC_001875.2 + 52039 0.72 0.645158
Target:  5'- gUCAACGACCGCgaCACCGACUg---- -3'
miRNA:   3'- -AGUUGCUGGCGggGUGGUUGAacguc -5'
6777 5' -54.8 NC_001875.2 + 49594 0.72 0.645158
Target:  5'- cCGACGAgCGCUaCCACCAGCgcGCAa -3'
miRNA:   3'- aGUUGCUgGCGG-GGUGGUUGaaCGUc -5'
6777 5' -54.8 NC_001875.2 + 47865 0.71 0.665986
Target:  5'- aUUGugGACCGCCUguuUAUCGACUUGguGu -3'
miRNA:   3'- -AGUugCUGGCGGG---GUGGUUGAACguC- -5'
6777 5' -54.8 NC_001875.2 + 34692 0.71 0.670141
Target:  5'- gUCAAgGGCCGCCCCaacggguucgccauaGCCGAgUUugGCAGc -3'
miRNA:   3'- -AGUUgCUGGCGGGG---------------UGGUUgAA--CGUC- -5'
6777 5' -54.8 NC_001875.2 + 82972 0.71 0.696991
Target:  5'- cUCGGCGACCGaCCCCucGCUGAUgaUUGCGu -3'
miRNA:   3'- -AGUUGCUGGC-GGGG--UGGUUG--AACGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.