miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6777 5' -54.8 NC_001875.2 + 3183 0.67 0.892343
Target:  5'- cCGGCGGCCGCgCaCCAgagaCAGgUUGCGGc -3'
miRNA:   3'- aGUUGCUGGCG-G-GGUg---GUUgAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 3875 0.71 0.676362
Target:  5'- gCAGC-ACCGCgCCGCCAaGCUggGCAGg -3'
miRNA:   3'- aGUUGcUGGCGgGGUGGU-UGAa-CGUC- -5'
6777 5' -54.8 NC_001875.2 + 6229 0.72 0.603441
Target:  5'- gUCGGCGacacgcccaGCCGCUCCACCAugUaGCGa -3'
miRNA:   3'- -AGUUGC---------UGGCGGGGUGGUugAaCGUc -5'
6777 5' -54.8 NC_001875.2 + 6518 0.79 0.294981
Target:  5'- aCAACG-CCGCCCaacaugaguuucuuUACCAACUUGCGGc -3'
miRNA:   3'- aGUUGCuGGCGGG--------------GUGGUUGAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 6840 0.71 0.676362
Target:  5'- aCAACGugC-CCgaCGCCAACUUGCAc -3'
miRNA:   3'- aGUUGCugGcGGg-GUGGUUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 6933 0.66 0.90799
Target:  5'- gCGugGACCGCgcgcuacaacaaaacCCgCGCCucaacacguACUUGCAGg -3'
miRNA:   3'- aGUugCUGGCG---------------GG-GUGGu--------UGAACGUC- -5'
6777 5' -54.8 NC_001875.2 + 7119 0.67 0.885418
Target:  5'- aCAuUGACCGCCaCgCGCCG-CUUGcCAGg -3'
miRNA:   3'- aGUuGCUGGCGG-G-GUGGUuGAAC-GUC- -5'
6777 5' -54.8 NC_001875.2 + 7336 0.66 0.899032
Target:  5'- gUCAGCGACCugcuGCCCgGCCAAaccaucaugUGUAu -3'
miRNA:   3'- -AGUUGCUGG----CGGGgUGGUUga-------ACGUc -5'
6777 5' -54.8 NC_001875.2 + 9382 0.66 0.92335
Target:  5'- --cGCGcGCCGCa--GCCAACUUGCAa -3'
miRNA:   3'- aguUGC-UGGCGgggUGGUUGAACGUc -5'
6777 5' -54.8 NC_001875.2 + 9606 0.69 0.785903
Target:  5'- --cGCGGCCGCCCUccuCCAGCggcuucacgUGCAc -3'
miRNA:   3'- aguUGCUGGCGGGGu--GGUUGa--------ACGUc -5'
6777 5' -54.8 NC_001875.2 + 9944 0.66 0.911682
Target:  5'- cUAGCGguGCUGCCCaCGCCGGCUUaUAGc -3'
miRNA:   3'- aGUUGC--UGGCGGG-GUGGUUGAAcGUC- -5'
6777 5' -54.8 NC_001875.2 + 13090 0.67 0.878259
Target:  5'- -gAGCaGGCCG-CCCACCAugUgccGCAGc -3'
miRNA:   3'- agUUG-CUGGCgGGGUGGUugAa--CGUC- -5'
6777 5' -54.8 NC_001875.2 + 13907 0.68 0.830727
Target:  5'- gCGGCGGCgCGCa-CGCCGGCcUGCAGc -3'
miRNA:   3'- aGUUGCUG-GCGggGUGGUUGaACGUC- -5'
6777 5' -54.8 NC_001875.2 + 14979 0.67 0.892343
Target:  5'- aCAACG-CCGCUCCAgcaCAACgauugGCGGu -3'
miRNA:   3'- aGUUGCuGGCGGGGUg--GUUGaa---CGUC- -5'
6777 5' -54.8 NC_001875.2 + 16282 0.67 0.863263
Target:  5'- cCGGCGACCGCacguccaugUgCGCCAGCaUUGUGGa -3'
miRNA:   3'- aGUUGCUGGCG---------GgGUGGUUG-AACGUC- -5'
6777 5' -54.8 NC_001875.2 + 16373 0.78 0.311403
Target:  5'- cCAAUGGCCGCgCCCGCUAGCUcaacgcgguaggUGCGGu -3'
miRNA:   3'- aGUUGCUGGCG-GGGUGGUUGA------------ACGUC- -5'
6777 5' -54.8 NC_001875.2 + 21679 0.66 0.899032
Target:  5'- gCGACG-CCGCCCgACgAGCgcgacGCGGu -3'
miRNA:   3'- aGUUGCuGGCGGGgUGgUUGaa---CGUC- -5'
6777 5' -54.8 NC_001875.2 + 28943 0.67 0.892343
Target:  5'- uUCAACGGCCGgCC-GCuCAAUgUGCGGu -3'
miRNA:   3'- -AGUUGCUGGCgGGgUG-GUUGaACGUC- -5'
6777 5' -54.8 NC_001875.2 + 31692 0.66 0.899032
Target:  5'- gCGugGACCGCCgcuugcgcgCCGCCGGC--GCAu -3'
miRNA:   3'- aGUugCUGGCGG---------GGUGGUUGaaCGUc -5'
6777 5' -54.8 NC_001875.2 + 32200 0.7 0.747406
Target:  5'- gCAGCaaGugUGCCCCuuCAACUUGCGc -3'
miRNA:   3'- aGUUG--CugGCGGGGugGUUGAACGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.