miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6778 5' -52.9 NC_001875.2 + 11984 0.66 0.95239
Target:  5'- gGcgACGGCGuuGGGCGCGgGuguGGUGGCGa -3'
miRNA:   3'- gCuaUGUCGU--UCCGCGUgU---UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 23256 0.66 0.943426
Target:  5'- aGA-ACAGCGacGGGCaGCGCAGcGcCAGCAc -3'
miRNA:   3'- gCUaUGUCGU--UCCG-CGUGUU-C-GUCGU- -5'
6778 5' -52.9 NC_001875.2 + 88358 0.66 0.94295
Target:  5'- -uGUGCAGCGugcacgggcaaaaGGGCGUGCucaaccGCAGCGa -3'
miRNA:   3'- gcUAUGUCGU-------------UCCGCGUGuu----CGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 52502 0.66 0.948036
Target:  5'- uGGUaaACAGC--GGCGCcaaAGGCAGCGc -3'
miRNA:   3'- gCUA--UGUCGuuCCGCGug-UUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 102371 0.66 0.943426
Target:  5'- uCGuc-CAGCAuGGCGCGCAAcucuuuCAGCAa -3'
miRNA:   3'- -GCuauGUCGUuCCGCGUGUUc-----GUCGU- -5'
6778 5' -52.9 NC_001875.2 + 107649 0.66 0.938557
Target:  5'- gCGccACAGUuGGGCaaACAAGUAGCAa -3'
miRNA:   3'- -GCuaUGUCGuUCCGcgUGUUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 32103 0.66 0.943426
Target:  5'- ---cACAGCAcgagcacgacaAGGCGCGCAcuuGCgAGCGc -3'
miRNA:   3'- gcuaUGUCGU-----------UCCGCGUGUu--CG-UCGU- -5'
6778 5' -52.9 NC_001875.2 + 1023 0.66 0.955288
Target:  5'- --uUGCAGCGcguggcggggcccgAGGCGCACAGcGUugGGCGc -3'
miRNA:   3'- gcuAUGUCGU--------------UCCGCGUGUU-CG--UCGU- -5'
6778 5' -52.9 NC_001875.2 + 65132 0.66 0.938557
Target:  5'- -cGUGCAGUacauggugucgGAGGCGguCAcguGCAGCAu -3'
miRNA:   3'- gcUAUGUCG-----------UUCCGCguGUu--CGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 129965 0.66 0.956493
Target:  5'- gGcgGCGGCGGcGGCgGCGgcGGCGGCAu -3'
miRNA:   3'- gCuaUGUCGUU-CCG-CGUguUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 83208 0.66 0.943426
Target:  5'- ----cCAGCGAcuGGCuGCGCAgcAGCGGCAc -3'
miRNA:   3'- gcuauGUCGUU--CCG-CGUGU--UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 107706 0.66 0.938557
Target:  5'- gCGAccuUAUAGC-GGGCGCGCAGG--GCAa -3'
miRNA:   3'- -GCU---AUGUCGuUCCGCGUGUUCguCGU- -5'
6778 5' -52.9 NC_001875.2 + 84105 0.66 0.943426
Target:  5'- uGA-AguGCucacuGGGCGCcggcuCAAGCAGCAg -3'
miRNA:   3'- gCUaUguCGu----UCCGCGu----GUUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 88224 0.66 0.956493
Target:  5'- -cAUugGGCAAaaacGGCGCA--AGCGGCGc -3'
miRNA:   3'- gcUAugUCGUU----CCGCGUguUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 126830 0.66 0.956493
Target:  5'- cCGAgGCGGCGcaaaGUGCACAagugccgcacAGCAGCGa -3'
miRNA:   3'- -GCUaUGUCGUuc--CGCGUGU----------UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 74295 0.66 0.938056
Target:  5'- gCGA-ACAGCGcaucgccuacGGCGCGCAGGCgccggacAGCAc -3'
miRNA:   3'- -GCUaUGUCGUu---------CCGCGUGUUCG-------UCGU- -5'
6778 5' -52.9 NC_001875.2 + 94805 0.66 0.938557
Target:  5'- -cGUGCAGCGccGUGCACGGccauaaauuGCAGCGu -3'
miRNA:   3'- gcUAUGUCGUucCGCGUGUU---------CGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 84351 0.66 0.948036
Target:  5'- gCGGaGCGGCugcgccgguAGGUGCGCGgccugccggGGCGGCGu -3'
miRNA:   3'- -GCUaUGUCGu--------UCCGCGUGU---------UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 90006 0.66 0.938557
Target:  5'- gCGGcGCGGCAAcuGGaCGCGCAAcuggccGCGGCGc -3'
miRNA:   3'- -GCUaUGUCGUU--CC-GCGUGUU------CGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 102848 0.66 0.95239
Target:  5'- -cGUACAGCAgauGGGacaGguUggGCAGCGg -3'
miRNA:   3'- gcUAUGUCGU---UCCg--CguGuuCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.