miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6778 5' -52.9 NC_001875.2 + 104891 0.68 0.890202
Target:  5'- uCGAUGCAcuGCGAGGUGUccguguugGCAacccAGCGGCc -3'
miRNA:   3'- -GCUAUGU--CGUUCCGCG--------UGU----UCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 59505 0.69 0.826122
Target:  5'- gCGAcACAGCAAuuGGCGaaaACuGAGCAGCu -3'
miRNA:   3'- -GCUaUGUCGUU--CCGCg--UG-UUCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 5788 0.69 0.834895
Target:  5'- uGGUACGGCAuuugccGGCuGCGCAuaaGGUAGUAg -3'
miRNA:   3'- gCUAUGUCGUu-----CCG-CGUGU---UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 91252 0.69 0.834895
Target:  5'- -cGUGCGGCAAGuugauuacguaGCGCGCGGGCAacuuGCGg -3'
miRNA:   3'- gcUAUGUCGUUC-----------CGCGUGUUCGU----CGU- -5'
6778 5' -52.9 NC_001875.2 + 124342 0.69 0.843465
Target:  5'- ---aACAGCAcGGCGCcgaucagccaaAUGAGCGGCAu -3'
miRNA:   3'- gcuaUGUCGUuCCGCG-----------UGUUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 9908 0.69 0.851825
Target:  5'- aCGuUACucGCGAcuGGCGCGCGGGCcGCAa -3'
miRNA:   3'- -GCuAUGu-CGUU--CCGCGUGUUCGuCGU- -5'
6778 5' -52.9 NC_001875.2 + 76427 0.68 0.867099
Target:  5'- gCGAaauUGCuGCAggucaauaucgggGGGCGCGCuGGCGGCc -3'
miRNA:   3'- -GCU---AUGuCGU-------------UCCGCGUGuUCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 118534 0.68 0.875562
Target:  5'- ---cAUAGUAAGuGCGUACcauGAGCGGCAa -3'
miRNA:   3'- gcuaUGUCGUUC-CGCGUG---UUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 39659 0.68 0.890202
Target:  5'- gCGAguUugGGCcggcGGCGCGCG-GCGGCGa -3'
miRNA:   3'- -GCU--AugUCGuu--CCGCGUGUuCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 84074 0.69 0.826122
Target:  5'- ---cACAGUcGGGUGCGuuacCAAGCGGCAg -3'
miRNA:   3'- gcuaUGUCGuUCCGCGU----GUUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 57843 0.7 0.817155
Target:  5'- uGAgcgcGCGaauCAAGGCGCugGAGCGGUAu -3'
miRNA:   3'- gCUa---UGUc--GUUCCGCGugUUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 42743 0.7 0.817155
Target:  5'- ---cGCGGCGAcGCGCAUgguGAGCGGCGc -3'
miRNA:   3'- gcuaUGUCGUUcCGCGUG---UUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 44445 0.74 0.569922
Target:  5'- gCGAU-CAGCAAGGCGCcguCGGcGCAGUg -3'
miRNA:   3'- -GCUAuGUCGUUCCGCGu--GUU-CGUCGu -5'
6778 5' -52.9 NC_001875.2 + 18996 0.73 0.644737
Target:  5'- ---cACGGCAGuGCGCGCAGGCcGCAa -3'
miRNA:   3'- gcuaUGUCGUUcCGCGUGUUCGuCGU- -5'
6778 5' -52.9 NC_001875.2 + 59695 0.72 0.718969
Target:  5'- aCGAUcuGCAGUuugggcuGGCGaGCGAGCAGCGg -3'
miRNA:   3'- -GCUA--UGUCGuu-----CCGCgUGUUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 131499 0.71 0.72933
Target:  5'- aGAUcgACAGUcugcGGCGCGCGGuGCAGCGg -3'
miRNA:   3'- gCUA--UGUCGuu--CCGCGUGUU-CGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 49994 0.71 0.758816
Target:  5'- uGAcGCGGCGcuugucgcgguugGGGCGCGCGuggucgccgGGCGGCGa -3'
miRNA:   3'- gCUaUGUCGU-------------UCCGCGUGU---------UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 124552 0.71 0.769744
Target:  5'- gGGUcgGCGGCGGGGuCGCuuuGGCGGCAc -3'
miRNA:   3'- gCUA--UGUCGUUCC-GCGuguUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 84284 0.7 0.789184
Target:  5'- cCGAUACuGCGAGcucugccagauGCGCGCcuaguAGCGGCGc -3'
miRNA:   3'- -GCUAUGuCGUUC-----------CGCGUGu----UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 122204 0.7 0.798676
Target:  5'- gCGAaACAcGCAcGGCGCGCGcacGCAGCu -3'
miRNA:   3'- -GCUaUGU-CGUuCCGCGUGUu--CGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.