miRNA display CGI


Results 1 - 20 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6778 5' -52.9 NC_001875.2 + 86738 1.09 0.003821
Target:  5'- uCGAUACAGCAAGGCGCACAAGCAGCAa -3'
miRNA:   3'- -GCUAUGUCGUUCCGCGUGUUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 111929 0.75 0.507535
Target:  5'- cCGGUGCAGCu-GcCGUACGAGCAGCu -3'
miRNA:   3'- -GCUAUGUCGuuCcGCGUGUUCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 100140 0.74 0.569922
Target:  5'- -aAUGCGcCGGcGGCGCGCAAGCGGCGg -3'
miRNA:   3'- gcUAUGUcGUU-CCGCGUGUUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 44445 0.74 0.569922
Target:  5'- gCGAU-CAGCAAGGCGCcguCGGcGCAGUg -3'
miRNA:   3'- -GCUAuGUCGUUCCGCGu--GUU-CGUCGu -5'
6778 5' -52.9 NC_001875.2 + 3043 0.74 0.580529
Target:  5'- cCGuuggGCAGCGcguaagAGGCGCGC-AGCGGCGc -3'
miRNA:   3'- -GCua--UGUCGU------UCCGCGUGuUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 80889 0.74 0.591176
Target:  5'- aGAgugGCagAGCAAGuCGCGCGAGCGGCGc -3'
miRNA:   3'- gCUa--UG--UCGUUCcGCGUGUUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 11152 0.74 0.601857
Target:  5'- aCGAUggACGGCcggucgauGGCGCAC-AGCAGCGc -3'
miRNA:   3'- -GCUA--UGUCGuu------CCGCGUGuUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 83315 0.73 0.612561
Target:  5'- -aAUACccGCGGGGCGCGCGccgGGCGGCGc -3'
miRNA:   3'- gcUAUGu-CGUUCCGCGUGU---UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 98651 0.73 0.616848
Target:  5'- ---gGCAGCGAGGCGCuggaauguaagguguGCcucGAGCGGCAg -3'
miRNA:   3'- gcuaUGUCGUUCCGCG---------------UG---UUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 63126 0.73 0.644737
Target:  5'- gGAUaGCGGCcGGGCGCGCGGcCGGCGc -3'
miRNA:   3'- gCUA-UGUCGuUCCGCGUGUUcGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 18996 0.73 0.644737
Target:  5'- ---cACGGCAGuGCGCGCAGGCcGCAa -3'
miRNA:   3'- gcuaUGUCGUUcCGCGUGUUCGuCGU- -5'
6778 5' -52.9 NC_001875.2 + 81976 0.73 0.655453
Target:  5'- uGGUuggcgcCGGCAAGGCGCGCcGGcCGGCGc -3'
miRNA:   3'- gCUAu-----GUCGUUCCGCGUGuUC-GUCGU- -5'
6778 5' -52.9 NC_001875.2 + 93295 0.72 0.666148
Target:  5'- cCGAcGCAGCAAcccGGC-CACGAGCuGCAa -3'
miRNA:   3'- -GCUaUGUCGUU---CCGcGUGUUCGuCGU- -5'
6778 5' -52.9 NC_001875.2 + 109108 0.72 0.676814
Target:  5'- gCGGUGCguGGCc-GGCGCACAAGUAGg- -3'
miRNA:   3'- -GCUAUG--UCGuuCCGCGUGUUCGUCgu -5'
6778 5' -52.9 NC_001875.2 + 39200 0.72 0.698013
Target:  5'- gCGGUGCAGCAcuuuuacaacaAcGCGCGCAAGCcGCu -3'
miRNA:   3'- -GCUAUGUCGU-----------UcCGCGUGUUCGuCGu -5'
6778 5' -52.9 NC_001875.2 + 95233 0.72 0.698013
Target:  5'- uCGGUGguGCAAgGGCGaCGCGcAGCGGCu -3'
miRNA:   3'- -GCUAUguCGUU-CCGC-GUGU-UCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 13750 0.72 0.707478
Target:  5'- ---cGCGGCGucGCGCACAaagugguGGCAGCAg -3'
miRNA:   3'- gcuaUGUCGUucCGCGUGU-------UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 18673 0.72 0.708526
Target:  5'- aCGGUGCGGCugcuGGGCgaaacGUACAAGgCGGCGc -3'
miRNA:   3'- -GCUAUGUCGu---UCCG-----CGUGUUC-GUCGU- -5'
6778 5' -52.9 NC_001875.2 + 92467 0.72 0.708526
Target:  5'- aCGAgugGCcGCAGGGUagGCACGAGaCGGCGg -3'
miRNA:   3'- -GCUa--UGuCGUUCCG--CGUGUUC-GUCGU- -5'
6778 5' -52.9 NC_001875.2 + 77246 0.72 0.708526
Target:  5'- cCGAUACcGCGccguGGGCGCGCcgccgggcgAAGCGGCc -3'
miRNA:   3'- -GCUAUGuCGU----UCCGCGUG---------UUCGUCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.