miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6778 5' -52.9 NC_001875.2 + 1023 0.66 0.955288
Target:  5'- --uUGCAGCGcguggcggggcccgAGGCGCACAGcGUugGGCGc -3'
miRNA:   3'- gcuAUGUCGU--------------UCCGCGUGUU-CG--UCGU- -5'
6778 5' -52.9 NC_001875.2 + 3043 0.74 0.580529
Target:  5'- cCGuuggGCAGCGcguaagAGGCGCGC-AGCGGCGc -3'
miRNA:   3'- -GCua--UGUCGU------UCCGCGUGuUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 3105 0.66 0.948036
Target:  5'- cCGGggcGCGGCucgcGGCGCAgaccUggGCGGCGa -3'
miRNA:   3'- -GCUa--UGUCGuu--CCGCGU----GuuCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 4282 0.68 0.890202
Target:  5'- -aGUGCAGCAGcGCGCcgauCAAGCAcGCGg -3'
miRNA:   3'- gcUAUGUCGUUcCGCGu---GUUCGU-CGU- -5'
6778 5' -52.9 NC_001875.2 + 5495 0.68 0.890202
Target:  5'- uCGGUgcACAGCAcgaccGGCGCACGcgcGCAGUu -3'
miRNA:   3'- -GCUA--UGUCGUu----CCGCGUGUu--CGUCGu -5'
6778 5' -52.9 NC_001875.2 + 5788 0.69 0.834895
Target:  5'- uGGUACGGCAuuugccGGCuGCGCAuaaGGUAGUAg -3'
miRNA:   3'- gCUAUGUCGUu-----CCG-CGUGU---UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 6972 0.72 0.718969
Target:  5'- -cGUACuuGCAGGGCGCA-AAGCGGCc -3'
miRNA:   3'- gcUAUGu-CGUUCCGCGUgUUCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 9908 0.69 0.851825
Target:  5'- aCGuUACucGCGAcuGGCGCGCGGGCcGCAa -3'
miRNA:   3'- -GCuAUGu-CGUU--CCGCGUGUUCGuCGU- -5'
6778 5' -52.9 NC_001875.2 + 11152 0.74 0.601857
Target:  5'- aCGAUggACGGCcggucgauGGCGCAC-AGCAGCGc -3'
miRNA:   3'- -GCUA--UGUCGuu------CCGCGUGuUCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 11984 0.66 0.95239
Target:  5'- gGcgACGGCGuuGGGCGCGgGuguGGUGGCGa -3'
miRNA:   3'- gCuaUGUCGU--UCCGCGUgU---UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 13732 0.67 0.933427
Target:  5'- ---gGCGGCAAugcGGuUGCGCAGGCGGUc -3'
miRNA:   3'- gcuaUGUCGUU---CC-GCGUGUUCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 13750 0.72 0.707478
Target:  5'- ---cGCGGCGucGCGCACAaagugguGGCAGCAg -3'
miRNA:   3'- gcuaUGUCGUucCGCGUGU-------UCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 15714 0.68 0.903846
Target:  5'- uGAcUGCGGCGAGGUGUGCGAggaccccaacGCGGUc -3'
miRNA:   3'- gCU-AUGUCGUUCCGCGUGUU----------CGUCGu -5'
6778 5' -52.9 NC_001875.2 + 17683 0.67 0.93237
Target:  5'- ---cGCAGUuugacuugucgcAGGCGUACAAGCuGCAu -3'
miRNA:   3'- gcuaUGUCGu-----------UCCGCGUGUUCGuCGU- -5'
6778 5' -52.9 NC_001875.2 + 17779 0.67 0.928035
Target:  5'- gGAaACuAGCGuGGCGUACGcGCAGCc -3'
miRNA:   3'- gCUaUG-UCGUuCCGCGUGUuCGUCGu -5'
6778 5' -52.9 NC_001875.2 + 18673 0.72 0.708526
Target:  5'- aCGGUGCGGCugcuGGGCgaaacGUACAAGgCGGCGc -3'
miRNA:   3'- -GCUAUGUCGu---UCCG-----CGUGUUC-GUCGU- -5'
6778 5' -52.9 NC_001875.2 + 18996 0.73 0.644737
Target:  5'- ---cACGGCAGuGCGCGCAGGCcGCAa -3'
miRNA:   3'- gcuaUGUCGUUcCGCGUGUUCGuCGU- -5'
6778 5' -52.9 NC_001875.2 + 21228 0.67 0.914637
Target:  5'- gGGUGCuugcaacaccaguuGGCGaagcugguccAGGCGCGCGcGCGGCGc -3'
miRNA:   3'- gCUAUG--------------UCGU----------UCCGCGUGUuCGUCGU- -5'
6778 5' -52.9 NC_001875.2 + 23256 0.66 0.943426
Target:  5'- aGA-ACAGCGacGGGCaGCGCAGcGcCAGCAc -3'
miRNA:   3'- gCUaUGUCGU--UCCG-CGUGUU-C-GUCGU- -5'
6778 5' -52.9 NC_001875.2 + 24005 0.66 0.948036
Target:  5'- ---cGCGucGCAAGGCGCAcCGGGC-GCGg -3'
miRNA:   3'- gcuaUGU--CGUUCCGCGU-GUUCGuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.