Results 1 - 20 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6779 | 5' | -57.7 | NC_001875.2 | + | 43324 | 0.66 | 0.801976 |
Target: 5'- cGCGGgucGGCGugGuUGCCGCCg---CGCa -3' miRNA: 3'- cUGUU---CCGCugC-GCGGCGGacaaGCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 13634 | 0.66 | 0.836219 |
Target: 5'- uGGC-AGGCGGuugcCGCGCCGCCgc-UCa- -3' miRNA: 3'- -CUGuUCCGCU----GCGCGGCGGacaAGcg -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 83591 | 0.66 | 0.793013 |
Target: 5'- ----cGGCGGgGCGCCGCCgua--GCu -3' miRNA: 3'- cuguuCCGCUgCGCGGCGGacaagCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 5919 | 0.66 | 0.819435 |
Target: 5'- cGGCAuGGCGuuggguaGCGCCGCgCagGUgggCGCg -3' miRNA: 3'- -CUGUuCCGCug-----CGCGGCG-Ga-CAa--GCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 125286 | 0.66 | 0.801976 |
Target: 5'- -uCGGGGUacaccuuguuGACGCGCCGCaaGUUgGUa -3' miRNA: 3'- cuGUUCCG----------CUGCGCGGCGgaCAAgCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 77471 | 0.66 | 0.827915 |
Target: 5'- cGAcCAAGGCG-UGCGCuCGCCcaa-CGCg -3' miRNA: 3'- -CU-GUUCCGCuGCGCG-GCGGacaaGCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 47988 | 0.66 | 0.810786 |
Target: 5'- aGCGGGGCGuCGaGCCGcCCUGgaaccagaUCGUg -3' miRNA: 3'- cUGUUCCGCuGCgCGGC-GGACa-------AGCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 113075 | 0.66 | 0.82539 |
Target: 5'- uGGCuuugauGGCGACGCgcgucagcgccuuaGCCGCCgugGUgagCGUu -3' miRNA: 3'- -CUGuu----CCGCUGCG--------------CGGCGGa--CAa--GCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 129163 | 0.66 | 0.809912 |
Target: 5'- -cCGAGGCGccgcaguugccccAgGCGCCGCCgg--CGCc -3' miRNA: 3'- cuGUUCCGC-------------UgCGCGGCGGacaaGCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 74266 | 0.66 | 0.810786 |
Target: 5'- gGACAGcGCGACGC-CgCGCCgGUUuaCGCg -3' miRNA: 3'- -CUGUUcCGCUGCGcG-GCGGaCAA--GCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 6962 | 0.66 | 0.836219 |
Target: 5'- cGACAucGCcacGGCGCGCUGCUUGacaGCg -3' miRNA: 3'- -CUGUucCG---CUGCGCGGCGGACaagCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 61506 | 0.66 | 0.819435 |
Target: 5'- cGGCucGGCGcCGCaGuCCGCgUGcUCGCg -3' miRNA: 3'- -CUGuuCCGCuGCG-C-GGCGgACaAGCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 79789 | 0.66 | 0.836219 |
Target: 5'- gGGCAgguaGGGCGGgucguCGgGCCGCUUGaaCGUg -3' miRNA: 3'- -CUGU----UCCGCU-----GCgCGGCGGACaaGCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 63725 | 0.66 | 0.819435 |
Target: 5'- cGGCGAcGGCgGGCGCuUCGCCggcgUCGCu -3' miRNA: 3'- -CUGUU-CCG-CUGCGcGGCGGaca-AGCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 98937 | 0.66 | 0.836219 |
Target: 5'- cGCGuGcGCGACGCG-CGCgUGUUCaGCc -3' miRNA: 3'- cUGUuC-CGCUGCGCgGCGgACAAG-CG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 71928 | 0.66 | 0.827915 |
Target: 5'- cGGCGAGcgccuugaccgcGCGcuccGCGCGCaGCCUGU-CGCc -3' miRNA: 3'- -CUGUUC------------CGC----UGCGCGgCGGACAaGCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 82678 | 0.66 | 0.822848 |
Target: 5'- cGGCGAGGUugucgaGAauuucguccugguaGCGCCGCCag-UCGCg -3' miRNA: 3'- -CUGUUCCG------CUg-------------CGCGGCGGacaAGCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 90455 | 0.66 | 0.836219 |
Target: 5'- aGGCGucgguGGGCGGCGCGUaauuuCGCUgcagCGCg -3' miRNA: 3'- -CUGU-----UCCGCUGCGCG-----GCGGacaaGCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 126893 | 0.66 | 0.836219 |
Target: 5'- aGAcCGAGGCGGCGCaaaguguuaguGCUGCCc---CGCa -3' miRNA: 3'- -CU-GUUCCGCUGCG-----------CGGCGGacaaGCG- -5' |
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6779 | 5' | -57.7 | NC_001875.2 | + | 36588 | 0.66 | 0.801976 |
Target: 5'- uGCAAaauGCGGCGCaGCCGCUgcgcgUCGCc -3' miRNA: 3'- cUGUUc--CGCUGCG-CGGCGGaca--AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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