miRNA display CGI


Results 1 - 20 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 5' -57.7 NC_001875.2 + 62 0.67 0.754856
Target:  5'- cGGCGGcGGCGAacgacaccaaugaCGCGCCGCCcGaucCGCc -3'
miRNA:   3'- -CUGUU-CCGCU-------------GCGCGGCGGaCaa-GCG- -5'
6779 5' -57.7 NC_001875.2 + 1721 0.67 0.754856
Target:  5'- uGCGGGcGCGAcaccgguCGCGCCGCCgc--CGCc -3'
miRNA:   3'- cUGUUC-CGCU-------GCGCGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 5747 0.73 0.413983
Target:  5'- ----uGGCGACGCGgCGCUUGcUUUGCa -3'
miRNA:   3'- cuguuCCGCUGCGCgGCGGAC-AAGCG- -5'
6779 5' -57.7 NC_001875.2 + 5919 0.66 0.819435
Target:  5'- cGGCAuGGCGuuggguaGCGCCGCgCagGUgggCGCg -3'
miRNA:   3'- -CUGUuCCGCug-----CGCGGCG-Ga-CAa--GCG- -5'
6779 5' -57.7 NC_001875.2 + 6962 0.66 0.836219
Target:  5'- cGACAucGCcacGGCGCGCUGCUUGacaGCg -3'
miRNA:   3'- -CUGUucCG---CUGCGCGGCGGACaagCG- -5'
6779 5' -57.7 NC_001875.2 + 7034 0.69 0.625922
Target:  5'- aGCGAGGUGgccGCGCGCUugucgGCCUGguucCGCu -3'
miRNA:   3'- cUGUUCCGC---UGCGCGG-----CGGACaa--GCG- -5'
6779 5' -57.7 NC_001875.2 + 7072 0.69 0.636118
Target:  5'- ----cGGCGACGCcaCCgGCCUGUgCGCa -3'
miRNA:   3'- cuguuCCGCUGCGc-GG-CGGACAaGCG- -5'
6779 5' -57.7 NC_001875.2 + 7117 0.67 0.755811
Target:  5'- cGACAuugaccGCcACGCGCCGCUUGccaggCGCg -3'
miRNA:   3'- -CUGUuc----CGcUGCGCGGCGGACaa---GCG- -5'
6779 5' -57.7 NC_001875.2 + 7119 0.67 0.764353
Target:  5'- cGGCGAaacGGcCGACGCG-UGCCUGUUgcuucacCGCa -3'
miRNA:   3'- -CUGUU---CC-GCUGCGCgGCGGACAA-------GCG- -5'
6779 5' -57.7 NC_001875.2 + 7566 0.71 0.505932
Target:  5'- aGGCGgcGGGuCGucgacgaccaACGCGCCGCCUG-UCGUc -3'
miRNA:   3'- -CUGU--UCC-GC----------UGCGCGGCGGACaAGCG- -5'
6779 5' -57.7 NC_001875.2 + 8513 0.66 0.801976
Target:  5'- --aAGGGCGuGCGCuCUGCCUGcgCGUc -3'
miRNA:   3'- cugUUCCGC-UGCGcGGCGGACaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 11916 0.76 0.288337
Target:  5'- cGGCGAGcagguguuuugcgcGCGGCGCGCCGaCUGUgcgCGCg -3'
miRNA:   3'- -CUGUUC--------------CGCUGCGCGGCgGACAa--GCG- -5'
6779 5' -57.7 NC_001875.2 + 13634 0.66 0.836219
Target:  5'- uGGC-AGGCGGuugcCGCGCCGCCgc-UCa- -3'
miRNA:   3'- -CUGuUCCGCU----GCGCGGCGGacaAGcg -5'
6779 5' -57.7 NC_001875.2 + 13792 0.67 0.764353
Target:  5'- gGACAaucgugcGGGUGGCGCGgCGUUgccgUCGCa -3'
miRNA:   3'- -CUGU-------UCCGCUGCGCgGCGGaca-AGCG- -5'
6779 5' -57.7 NC_001875.2 + 13904 0.7 0.565104
Target:  5'- aACGcGGCGGCGCGCaCGCCgGccUGCa -3'
miRNA:   3'- cUGUuCCGCUGCGCG-GCGGaCaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 18052 0.7 0.605552
Target:  5'- aACGAGGCGuACuGcCGCCGCUUcGggCGCg -3'
miRNA:   3'- cUGUUCCGC-UG-C-GCGGCGGA-CaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 18199 0.68 0.700946
Target:  5'- gGGCGuAGGCGugGUgguugcccaaucgccGCUGaCCUGUUCGg -3'
miRNA:   3'- -CUGU-UCCGCugCG---------------CGGC-GGACAAGCg -5'
6779 5' -57.7 NC_001875.2 + 19868 0.66 0.827915
Target:  5'- cGCGucGCGGCGCgGgCGCC-GUUUGCg -3'
miRNA:   3'- cUGUucCGCUGCG-CgGCGGaCAAGCG- -5'
6779 5' -57.7 NC_001875.2 + 20643 0.7 0.615731
Target:  5'- aACAAaaaacGGCG-CGCGCCGCCcag-CGCg -3'
miRNA:   3'- cUGUU-----CCGCuGCGCGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 21690 0.7 0.585261
Target:  5'- cGACGAGcGCGACGCGgUGCUgcgGUccagcCGCa -3'
miRNA:   3'- -CUGUUC-CGCUGCGCgGCGGa--CAa----GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.