miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 5' -57.7 NC_001875.2 + 86606 1.12 0.001075
Target:  5'- cGACAAGGCGACGCGCCGCCUGUUCGCg -3'
miRNA:   3'- -CUGUUCCGCUGCGCGGCGGACAAGCG- -5'
6779 5' -57.7 NC_001875.2 + 45232 0.79 0.197591
Target:  5'- cGCGaacAGGCGGCGCGUCGCCUugUCGUa -3'
miRNA:   3'- cUGU---UCCGCUGCGCGGCGGAcaAGCG- -5'
6779 5' -57.7 NC_001875.2 + 50530 0.77 0.258148
Target:  5'- uGACGAGGagGAgGCGCCGCCggcgGcgCGCg -3'
miRNA:   3'- -CUGUUCCg-CUgCGCGGCGGa---CaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 37509 0.76 0.277108
Target:  5'- cGACGGugcGGaCGACGCGCCcuGCCUGgaCGCg -3'
miRNA:   3'- -CUGUU---CC-GCUGCGCGG--CGGACaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 11916 0.76 0.288337
Target:  5'- cGGCGAGcagguguuuugcgcGCGGCGCGCCGaCUGUgcgCGCg -3'
miRNA:   3'- -CUGUUC--------------CGCUGCGCGGCgGACAa--GCG- -5'
6779 5' -57.7 NC_001875.2 + 40643 0.76 0.290355
Target:  5'- aACuGGGCGcgcACGCGCCGgCUGUUgCGCg -3'
miRNA:   3'- cUGuUCCGC---UGCGCGGCgGACAA-GCG- -5'
6779 5' -57.7 NC_001875.2 + 60299 0.75 0.311148
Target:  5'- cGACAcugcAGGCGACGCGUCGCagcgGUUCu- -3'
miRNA:   3'- -CUGU----UCCGCUGCGCGGCGga--CAAGcg -5'
6779 5' -57.7 NC_001875.2 + 58029 0.75 0.325628
Target:  5'- cGACuacaacguGGGCGGCGCGCUGCC-GUUCcaGCc -3'
miRNA:   3'- -CUGu-------UCCGCUGCGCGGCGGaCAAG--CG- -5'
6779 5' -57.7 NC_001875.2 + 71539 0.75 0.325628
Target:  5'- -cCGcuGCGACGCGUCGCCUGcagugUCGCc -3'
miRNA:   3'- cuGUucCGCUGCGCGGCGGACa----AGCG- -5'
6779 5' -57.7 NC_001875.2 + 43599 0.75 0.340602
Target:  5'- cGGCAGcGGCGgcGCGCGCCGCUUG--CGCc -3'
miRNA:   3'- -CUGUU-CCGC--UGCGCGGCGGACaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 33316 0.74 0.388456
Target:  5'- uGGCGAGcGCGugGCGuuGCCaaggGUcgUCGCc -3'
miRNA:   3'- -CUGUUC-CGCugCGCggCGGa---CA--AGCG- -5'
6779 5' -57.7 NC_001875.2 + 5747 0.73 0.413983
Target:  5'- ----uGGCGACGCGgCGCUUGcUUUGCa -3'
miRNA:   3'- cuguuCCGCUGCGCgGCGGAC-AAGCG- -5'
6779 5' -57.7 NC_001875.2 + 95167 0.73 0.413983
Target:  5'- cGugGAGGUGACGCGCC-CCgagcucagCGCg -3'
miRNA:   3'- -CugUUCCGCUGCGCGGcGGacaa----GCG- -5'
6779 5' -57.7 NC_001875.2 + 54094 0.73 0.413983
Target:  5'- cACGGGGuCGAUGCGCUGCCag--CGCa -3'
miRNA:   3'- cUGUUCC-GCUGCGCGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 62232 0.72 0.449573
Target:  5'- gGACAGGGUGgacGCGCGCCGCgUaaagCGCc -3'
miRNA:   3'- -CUGUUCCGC---UGCGCGGCGgAcaa-GCG- -5'
6779 5' -57.7 NC_001875.2 + 32246 0.72 0.449573
Target:  5'- cGGCAAauuGGCuGCGCGCCGCCUuuuauacgCGCg -3'
miRNA:   3'- -CUGUU---CCGcUGCGCGGCGGAcaa-----GCG- -5'
6779 5' -57.7 NC_001875.2 + 31281 0.72 0.455056
Target:  5'- aGACGAGGCGugcauugguuaccACGCGCCGUUuugcgacgcaucugUGUUCGa -3'
miRNA:   3'- -CUGUUCCGC-------------UGCGCGGCGG--------------ACAAGCg -5'
6779 5' -57.7 NC_001875.2 + 36102 0.72 0.458732
Target:  5'- cGGCAGcacgcGGCGGCgGCGCCGCUcaUGcacUUCGCg -3'
miRNA:   3'- -CUGUU-----CCGCUG-CGCGGCGG--AC---AAGCG- -5'
6779 5' -57.7 NC_001875.2 + 57536 0.72 0.458732
Target:  5'- ----cGGCGccuGCGCGCCGUaggcgaugcgCUGUUCGCg -3'
miRNA:   3'- cuguuCCGC---UGCGCGGCG----------GACAAGCG- -5'
6779 5' -57.7 NC_001875.2 + 37115 0.72 0.467989
Target:  5'- gGGCGcGGCGcCGCGCCGgC-GUUUGCg -3'
miRNA:   3'- -CUGUuCCGCuGCGCGGCgGaCAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.