miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 5' -57.7 NC_001875.2 + 90698 0.7 0.595393
Target:  5'- cGAUggGGUugccGGCGCgGCCGCCgGUcaagCGCg -3'
miRNA:   3'- -CUGuuCCG----CUGCG-CGGCGGaCAa---GCG- -5'
6779 5' -57.7 NC_001875.2 + 117926 0.71 0.515626
Target:  5'- cGGCAAgcugcaggccGGCGuGCGCGCCGCCgcGUUUGg -3'
miRNA:   3'- -CUGUU----------CCGC-UGCGCGGCGGa-CAAGCg -5'
6779 5' -57.7 NC_001875.2 + 111876 0.71 0.555091
Target:  5'- aGCAAcGGCGAgGCGCCGgCCggaccGUgCGCg -3'
miRNA:   3'- cUGUU-CCGCUgCGCGGC-GGa----CAaGCG- -5'
6779 5' -57.7 NC_001875.2 + 65775 0.71 0.555091
Target:  5'- cGGCGGgcGGCGGCGCGUCGUCguUGagCGCc -3'
miRNA:   3'- -CUGUU--CCGCUGCGCGGCGG--ACaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 88240 0.7 0.575162
Target:  5'- cGCAAgcGGCG-CGCGCCGCCgcugcCGCc -3'
miRNA:   3'- cUGUU--CCGCuGCGCGGCGGacaa-GCG- -5'
6779 5' -57.7 NC_001875.2 + 38315 0.7 0.584249
Target:  5'- cGACAAGGCcggcggcaugcaaGACGUGCUGUgguugCUGUgUCGCu -3'
miRNA:   3'- -CUGUUCCG-------------CUGCGCGGCG-----GACA-AGCG- -5'
6779 5' -57.7 NC_001875.2 + 69126 0.7 0.585261
Target:  5'- cGACAuuGGCGACGCGCaguuuuucaaaUGCCUcaacGaUCGCg -3'
miRNA:   3'- -CUGUu-CCGCUGCGCG-----------GCGGA----CaAGCG- -5'
6779 5' -57.7 NC_001875.2 + 85203 0.7 0.585261
Target:  5'- gGAUGAGcCGACGgGCCGCCg---CGCg -3'
miRNA:   3'- -CUGUUCcGCUGCgCGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 51913 0.7 0.585261
Target:  5'- aACGAGGUGAUGcCGCCGCUgcacagcGUgcggCGCu -3'
miRNA:   3'- cUGUUCCGCUGC-GCGGCGGa------CAa---GCG- -5'
6779 5' -57.7 NC_001875.2 + 110756 0.72 0.496317
Target:  5'- aGCGcGGCGAC-CGCCGCCg---CGCg -3'
miRNA:   3'- cUGUuCCGCUGcGCGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 130926 0.72 0.496317
Target:  5'- cGGCAGuGGCGGCgguuuGCGCCGUgUGUUUGg -3'
miRNA:   3'- -CUGUU-CCGCUG-----CGCGGCGgACAAGCg -5'
6779 5' -57.7 NC_001875.2 + 37115 0.72 0.467989
Target:  5'- gGGCGcGGCGcCGCGCCGgC-GUUUGCg -3'
miRNA:   3'- -CUGUuCCGCuGCGCGGCgGaCAAGCG- -5'
6779 5' -57.7 NC_001875.2 + 37509 0.76 0.277108
Target:  5'- cGACGGugcGGaCGACGCGCCcuGCCUGgaCGCg -3'
miRNA:   3'- -CUGUU---CC-GCUGCGCGG--CGGACaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 11916 0.76 0.288337
Target:  5'- cGGCGAGcagguguuuugcgcGCGGCGCGCCGaCUGUgcgCGCg -3'
miRNA:   3'- -CUGUUC--------------CGCUGCGCGGCgGACAa--GCG- -5'
6779 5' -57.7 NC_001875.2 + 58029 0.75 0.325628
Target:  5'- cGACuacaacguGGGCGGCGCGCUGCC-GUUCcaGCc -3'
miRNA:   3'- -CUGu-------UCCGCUGCGCGGCGGaCAAG--CG- -5'
6779 5' -57.7 NC_001875.2 + 71539 0.75 0.325628
Target:  5'- -cCGcuGCGACGCGUCGCCUGcagugUCGCc -3'
miRNA:   3'- cuGUucCGCUGCGCGGCGGACa----AGCG- -5'
6779 5' -57.7 NC_001875.2 + 33316 0.74 0.388456
Target:  5'- uGGCGAGcGCGugGCGuuGCCaaggGUcgUCGCc -3'
miRNA:   3'- -CUGUUC-CGCugCGCggCGGa---CA--AGCG- -5'
6779 5' -57.7 NC_001875.2 + 5747 0.73 0.413983
Target:  5'- ----uGGCGACGCGgCGCUUGcUUUGCa -3'
miRNA:   3'- cuguuCCGCUGCGCgGCGGAC-AAGCG- -5'
6779 5' -57.7 NC_001875.2 + 54094 0.73 0.413983
Target:  5'- cACGGGGuCGAUGCGCUGCCag--CGCa -3'
miRNA:   3'- cUGUUCC-GCUGCGCGGCGGacaaGCG- -5'
6779 5' -57.7 NC_001875.2 + 62232 0.72 0.449573
Target:  5'- gGACAGGGUGgacGCGCGCCGCgUaaagCGCc -3'
miRNA:   3'- -CUGUUCCGC---UGCGCGGCGgAcaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.