miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6781 3' -58.1 NC_001875.2 + 32798 0.66 0.775187
Target:  5'- -gGGCGCCG-CGCCGgCaAGCUCGg-- -3'
miRNA:   3'- ugCUGCGGCuGUGGUgG-UCGAGCaga -5'
6781 3' -58.1 NC_001875.2 + 42603 0.66 0.819737
Target:  5'- uCGGCGCUgGGCACCGCCAacacGCaaguguacuccUUGUCUg -3'
miRNA:   3'- uGCUGCGG-CUGUGGUGGU----CG-----------AGCAGA- -5'
6781 3' -58.1 NC_001875.2 + 23468 0.66 0.775187
Target:  5'- uCGGCGUCGAuccaCAUCACCGacGCgUCGUCg -3'
miRNA:   3'- uGCUGCGGCU----GUGGUGGU--CG-AGCAGa -5'
6781 3' -58.1 NC_001875.2 + 129185 0.66 0.775187
Target:  5'- gGCGcCGCCGGCGCCGCaAGUagacgUGUCc -3'
miRNA:   3'- -UGCuGCGGCUGUGGUGgUCGa----GCAGa -5'
6781 3' -58.1 NC_001875.2 + 80263 0.66 0.81113
Target:  5'- aACGugGCC-ACGCCGCgcgucgugaaCGGCUCG-Ca -3'
miRNA:   3'- -UGCugCGGcUGUGGUG----------GUCGAGCaGa -5'
6781 3' -58.1 NC_001875.2 + 74312 0.66 0.784383
Target:  5'- uACGGCGCgcaGGCGCCGgaCAGCacgggCGUCa -3'
miRNA:   3'- -UGCUGCGg--CUGUGGUg-GUCGa----GCAGa -5'
6781 3' -58.1 NC_001875.2 + 25442 0.66 0.775187
Target:  5'- aACGGCGUUuuccaaaaACUACCGGCUUGUCg -3'
miRNA:   3'- -UGCUGCGGcug-----UGGUGGUCGAGCAGa -5'
6781 3' -58.1 NC_001875.2 + 65486 0.66 0.784383
Target:  5'- uCGACGCCGACuggaugcgcGCCuuCCAG-UCGUUg -3'
miRNA:   3'- uGCUGCGGCUG---------UGGu-GGUCgAGCAGa -5'
6781 3' -58.1 NC_001875.2 + 11205 0.66 0.81113
Target:  5'- cACGACGCCG-CGCCGgacgagaaGGC-CGUCa -3'
miRNA:   3'- -UGCUGCGGCuGUGGUgg------UCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 16947 0.66 0.775187
Target:  5'- cGCGuuGCGCCacGugACCACCAGCgcuuuUUGUUUg -3'
miRNA:   3'- -UGC--UGCGG--CugUGGUGGUCG-----AGCAGA- -5'
6781 3' -58.1 NC_001875.2 + 82988 0.66 0.819737
Target:  5'- cGCGGCGCCGcucguCGCCGgCgGGCUUGa-- -3'
miRNA:   3'- -UGCUGCGGCu----GUGGU-GgUCGAGCaga -5'
6781 3' -58.1 NC_001875.2 + 54019 0.66 0.775187
Target:  5'- gGCGGCGC--GCGCgUACCGGCacUCGUCg -3'
miRNA:   3'- -UGCUGCGgcUGUG-GUGGUCG--AGCAGa -5'
6781 3' -58.1 NC_001875.2 + 95192 0.66 0.774261
Target:  5'- aGCG-CGCaCGACGCgGCCaucuucaAGCUCGUg- -3'
miRNA:   3'- -UGCuGCG-GCUGUGgUGG-------UCGAGCAga -5'
6781 3' -58.1 NC_001875.2 + 25184 0.66 0.81113
Target:  5'- -gGACGCCGGCAUugacauguaCACC-GC-CGUCg -3'
miRNA:   3'- ugCUGCGGCUGUG---------GUGGuCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 88287 0.66 0.802363
Target:  5'- -aGACGCCGcC-CCGCCAcGUUCGcCa -3'
miRNA:   3'- ugCUGCGGCuGuGGUGGU-CGAGCaGa -5'
6781 3' -58.1 NC_001875.2 + 11936 0.66 0.792545
Target:  5'- cGCGgcGCGCCGACugUgcgcgcgACCGGCggcgCGUUg -3'
miRNA:   3'- -UGC--UGCGGCUGugG-------UGGUCGa---GCAGa -5'
6781 3' -58.1 NC_001875.2 + 19124 0.66 0.819737
Target:  5'- cGCGACGCgccuaccacggCGGCGCCGUCAGCgacaCGUUUu -3'
miRNA:   3'- -UGCUGCG-----------GCUGUGGUGGUCGa---GCAGA- -5'
6781 3' -58.1 NC_001875.2 + 5748 0.66 0.81113
Target:  5'- gGCGACGCgGcgcuugcuuuGCACCGCguuCAGCgCGUCc -3'
miRNA:   3'- -UGCUGCGgC----------UGUGGUG---GUCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 32967 0.66 0.81113
Target:  5'- aACGGCGcCCGcgcacauuaGCGCCACCAaCUCG-Cg -3'
miRNA:   3'- -UGCUGC-GGC---------UGUGGUGGUcGAGCaGa -5'
6781 3' -58.1 NC_001875.2 + 99387 0.66 0.81113
Target:  5'- aGCGcCGCacCGGCGgCGCCAGCggGUCg -3'
miRNA:   3'- -UGCuGCG--GCUGUgGUGGUCGagCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.