miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6781 3' -58.1 NC_001875.2 + 7067 0.69 0.606846
Target:  5'- cGCuGCGgCGACGCCACCGGCcUGUg- -3'
miRNA:   3'- -UGcUGCgGCUGUGGUGGUCGaGCAga -5'
6781 3' -58.1 NC_001875.2 + 39353 0.71 0.497977
Target:  5'- cUGACGCUGACGcCCGCCGuCUCGUg- -3'
miRNA:   3'- uGCUGCGGCUGU-GGUGGUcGAGCAga -5'
6781 3' -58.1 NC_001875.2 + 18170 0.71 0.536776
Target:  5'- cGCGACGCCGcCACUguggcgguGCCGGCgggCGUa- -3'
miRNA:   3'- -UGCUGCGGCuGUGG--------UGGUCGa--GCAga -5'
6781 3' -58.1 NC_001875.2 + 81306 0.71 0.536776
Target:  5'- cGCGcCGCCGGCGgCGCCuccucCUCGUCa -3'
miRNA:   3'- -UGCuGCGGCUGUgGUGGuc---GAGCAGa -5'
6781 3' -58.1 NC_001875.2 + 97910 0.7 0.546646
Target:  5'- uCGGCGCCGACGCCcgcuGCguGUUCGa-- -3'
miRNA:   3'- uGCUGCGGCUGUGG----UGguCGAGCaga -5'
6781 3' -58.1 NC_001875.2 + 45458 0.7 0.586633
Target:  5'- uCGGCGCuCGGCGCC-CgCAGCcgcgCGUCUa -3'
miRNA:   3'- uGCUGCG-GCUGUGGuG-GUCGa---GCAGA- -5'
6781 3' -58.1 NC_001875.2 + 55072 0.7 0.586633
Target:  5'- gAUGGCGCUGuaGCACUcgGCCAGCgCGUCc -3'
miRNA:   3'- -UGCUGCGGC--UGUGG--UGGUCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 35414 0.7 0.596727
Target:  5'- aGCGACGCCGACAagCGCgAGUUUG-Cg -3'
miRNA:   3'- -UGCUGCGGCUGUg-GUGgUCGAGCaGa -5'
6781 3' -58.1 NC_001875.2 + 110005 0.69 0.606846
Target:  5'- gUGGCGuuGACGCgCGCgCAGCUCGa-- -3'
miRNA:   3'- uGCUGCggCUGUG-GUG-GUCGAGCaga -5'
6781 3' -58.1 NC_001875.2 + 40605 0.71 0.488471
Target:  5'- uACGGCGCCGugguggGCGCCACCAcGCgccUCGcCUa -3'
miRNA:   3'- -UGCUGCGGC------UGUGGUGGU-CG---AGCaGA- -5'
6781 3' -58.1 NC_001875.2 + 96105 0.72 0.47905
Target:  5'- cGCGAgcUGaCCGACGCgGCCgAGCUUGUCa -3'
miRNA:   3'- -UGCU--GC-GGCUGUGgUGG-UCGAGCAGa -5'
6781 3' -58.1 NC_001875.2 + 89307 0.72 0.47905
Target:  5'- cAUGGCGCCGcCACCAugcgcuUCGGCUCGcUCa -3'
miRNA:   3'- -UGCUGCGGCuGUGGU------GGUCGAGC-AGa -5'
6781 3' -58.1 NC_001875.2 + 95738 0.75 0.32022
Target:  5'- aGCGGCGCCGcCGCCGCguGCUgccgcgcgagcgCGUCUu -3'
miRNA:   3'- -UGCUGCGGCuGUGGUGguCGA------------GCAGA- -5'
6781 3' -58.1 NC_001875.2 + 40091 0.74 0.382053
Target:  5'- cGCGGCGCUGACgcGCCACUGGCUgGcgCUg -3'
miRNA:   3'- -UGCUGCGGCUG--UGGUGGUCGAgCa-GA- -5'
6781 3' -58.1 NC_001875.2 + 41812 0.73 0.398706
Target:  5'- cACGcGCGCCGGCGCCgcgGCCAGUugcgCGUCc -3'
miRNA:   3'- -UGC-UGCGGCUGUGG---UGGUCGa---GCAGa -5'
6781 3' -58.1 NC_001875.2 + 54750 0.73 0.398706
Target:  5'- gGCGcacCGCCGGCACCGCCAGCg----- -3'
miRNA:   3'- -UGCu--GCGGCUGUGGUGGUCGagcaga -5'
6781 3' -58.1 NC_001875.2 + 69202 0.73 0.415816
Target:  5'- cGCGGCGCCGACgGCCAgUAcGCUUGUUc -3'
miRNA:   3'- -UGCUGCGGCUG-UGGUgGU-CGAGCAGa -5'
6781 3' -58.1 NC_001875.2 + 66063 0.73 0.423661
Target:  5'- cCGACGCCGcGCgcgugcucgcccaGCCGCCGGCUCagGUCg -3'
miRNA:   3'- uGCUGCGGC-UG-------------UGGUGGUCGAG--CAGa -5'
6781 3' -58.1 NC_001875.2 + 45914 0.72 0.442304
Target:  5'- aAUGACGCCGACuuUGCuCuGCUCGUCg -3'
miRNA:   3'- -UGCUGCGGCUGugGUG-GuCGAGCAGa -5'
6781 3' -58.1 NC_001875.2 + 70247 0.72 0.442304
Target:  5'- aGCGcCGCCGGCGCC-CgAGC-CGUCg -3'
miRNA:   3'- -UGCuGCGGCUGUGGuGgUCGaGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.