miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6781 3' -58.1 NC_001875.2 + 1739 0.68 0.697838
Target:  5'- cGCGcCGCCGcCGCCGCCAuuUcCGUCg -3'
miRNA:   3'- -UGCuGCGGCuGUGGUGGUcgA-GCAGa -5'
6781 3' -58.1 NC_001875.2 + 2296 0.74 0.365871
Target:  5'- cGCGcGCGCCGugGCCgcgcgcagcucgGCCAGCUCGg-- -3'
miRNA:   3'- -UGC-UGCGGCugUGG------------UGGUCGAGCaga -5'
6781 3' -58.1 NC_001875.2 + 2663 0.66 0.802363
Target:  5'- uGCGGCGCCGGCGgCGCCuggGGCaacugCGg-- -3'
miRNA:   3'- -UGCUGCGGCUGUgGUGG---UCGa----GCaga -5'
6781 3' -58.1 NC_001875.2 + 3799 0.67 0.746879
Target:  5'- -gGGC-CCGACucagcgucgACCACCGGCcgUCGUCg -3'
miRNA:   3'- ugCUGcGGCUG---------UGGUGGUCG--AGCAGa -5'
6781 3' -58.1 NC_001875.2 + 5748 0.66 0.81113
Target:  5'- gGCGACGCgGcgcuugcuuuGCACCGCguuCAGCgCGUCc -3'
miRNA:   3'- -UGCUGCGgC----------UGUGGUG---GUCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 6505 0.67 0.756426
Target:  5'- cGCGccaacACGCUGGCcgccguCCACCGGUccUCGUCg -3'
miRNA:   3'- -UGC-----UGCGGCUGu-----GGUGGUCG--AGCAGa -5'
6781 3' -58.1 NC_001875.2 + 7067 0.69 0.606846
Target:  5'- cGCuGCGgCGACGCCACCGGCcUGUg- -3'
miRNA:   3'- -UGcUGCgGCUGUGGUGGUCGaGCAga -5'
6781 3' -58.1 NC_001875.2 + 8931 0.67 0.717679
Target:  5'- cACGACGCUGcaGCAgCgGCCGGCcguuUCGUCc -3'
miRNA:   3'- -UGCUGCGGC--UGU-GgUGGUCG----AGCAGa -5'
6781 3' -58.1 NC_001875.2 + 9126 0.68 0.667691
Target:  5'- -gGACGCCGuggacuCGCgCGCCAGUUCGg-- -3'
miRNA:   3'- ugCUGCGGCu-----GUG-GUGGUCGAGCaga -5'
6781 3' -58.1 NC_001875.2 + 11205 0.66 0.81113
Target:  5'- cACGACGCCG-CGCCGgacgagaaGGC-CGUCa -3'
miRNA:   3'- -UGCUGCGGCuGUGGUgg------UCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 11936 0.66 0.792545
Target:  5'- cGCGgcGCGCCGACugUgcgcgcgACCGGCggcgCGUUg -3'
miRNA:   3'- -UGC--UGCGGCUGugG-------UGGUCGa---GCAGa -5'
6781 3' -58.1 NC_001875.2 + 12845 0.7 0.596727
Target:  5'- gGCGGCGCCGGCuAgCACgCAGC-CGUg- -3'
miRNA:   3'- -UGCUGCGGCUG-UgGUG-GUCGaGCAga -5'
6781 3' -58.1 NC_001875.2 + 13914 0.7 0.566549
Target:  5'- cGCGcACGCCG--GCCugCAGCUugcCGUCUg -3'
miRNA:   3'- -UGC-UGCGGCugUGGugGUCGA---GCAGA- -5'
6781 3' -58.1 NC_001875.2 + 14489 0.72 0.460483
Target:  5'- gACGGCcaGCCGGC-CCGCCGGUUCGcCc -3'
miRNA:   3'- -UGCUG--CGGCUGuGGUGGUCGAGCaGa -5'
6781 3' -58.1 NC_001875.2 + 15259 0.67 0.717679
Target:  5'- --cACGCUGcGCACCACCGGCggCGUg- -3'
miRNA:   3'- ugcUGCGGC-UGUGGUGGUCGa-GCAga -5'
6781 3' -58.1 NC_001875.2 + 16947 0.66 0.775187
Target:  5'- cGCGuuGCGCCacGugACCACCAGCgcuuuUUGUUUg -3'
miRNA:   3'- -UGC--UGCGG--CugUGGUGGUCG-----AGCAGA- -5'
6781 3' -58.1 NC_001875.2 + 18170 0.71 0.536776
Target:  5'- cGCGACGCCGcCACUguggcgguGCCGGCgggCGUa- -3'
miRNA:   3'- -UGCUGCGGCuGUGG--------UGGUCGa--GCAga -5'
6781 3' -58.1 NC_001875.2 + 18213 0.67 0.717679
Target:  5'- cGCGGCGCCGuCGCCGCUcuuGC-CGcCg -3'
miRNA:   3'- -UGCUGCGGCuGUGGUGGu--CGaGCaGa -5'
6781 3' -58.1 NC_001875.2 + 19124 0.66 0.819737
Target:  5'- cGCGACGCgccuaccacggCGGCGCCGUCAGCgacaCGUUUu -3'
miRNA:   3'- -UGCUGCG-----------GCUGUGGUGGUCGa---GCAGA- -5'
6781 3' -58.1 NC_001875.2 + 19993 0.78 0.199285
Target:  5'- uGCGugGCCaGACACCugGCCGGCUCG-Cg -3'
miRNA:   3'- -UGCugCGG-CUGUGG--UGGUCGAGCaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.