miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6781 3' -58.1 NC_001875.2 + 81507 1.06 0.002469
Target:  5'- aACGACGCCGACACCACCAGCUCGUCUu -3'
miRNA:   3'- -UGCUGCGGCUGUGGUGGUCGAGCAGA- -5'
6781 3' -58.1 NC_001875.2 + 36441 0.82 0.108273
Target:  5'- uGCGACGCCGGCGCgCugCGGCUCGa-- -3'
miRNA:   3'- -UGCUGCGGCUGUG-GugGUCGAGCaga -5'
6781 3' -58.1 NC_001875.2 + 19993 0.78 0.199285
Target:  5'- uGCGugGCCaGACACCugGCCGGCUCG-Cg -3'
miRNA:   3'- -UGCugCGG-CUGUGG--UGGUCGAGCaGa -5'
6781 3' -58.1 NC_001875.2 + 74155 0.78 0.2145
Target:  5'- cGCGGCGcCCGcCGCCGCCAGCUUGg-- -3'
miRNA:   3'- -UGCUGC-GGCuGUGGUGGUCGAGCaga -5'
6781 3' -58.1 NC_001875.2 + 95738 0.75 0.32022
Target:  5'- aGCGGCGCCGcCGCCGCguGCUgccgcgcgagcgCGUCUu -3'
miRNA:   3'- -UGCUGCGGCuGUGGUGguCGA------------GCAGA- -5'
6781 3' -58.1 NC_001875.2 + 100255 0.74 0.342497
Target:  5'- cACGGCGCCgGACACCACCcuuaaCUCGUg- -3'
miRNA:   3'- -UGCUGCGG-CUGUGGUGGuc---GAGCAga -5'
6781 3' -58.1 NC_001875.2 + 68110 0.74 0.357959
Target:  5'- aGCGACGCCGGCGaagCGCCcGC-CGUCg -3'
miRNA:   3'- -UGCUGCGGCUGUg--GUGGuCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 2296 0.74 0.365871
Target:  5'- cGCGcGCGCCGugGCCgcgcgcagcucgGCCAGCUCGg-- -3'
miRNA:   3'- -UGC-UGCGGCugUGG------------UGGUCGAGCaga -5'
6781 3' -58.1 NC_001875.2 + 91372 0.74 0.373903
Target:  5'- cAUGACGcCCGGCACCACCAcGCccUCGgggCUg -3'
miRNA:   3'- -UGCUGC-GGCUGUGGUGGU-CG--AGCa--GA- -5'
6781 3' -58.1 NC_001875.2 + 40091 0.74 0.382053
Target:  5'- cGCGGCGCUGACgcGCCACUGGCUgGcgCUg -3'
miRNA:   3'- -UGCUGCGGCUG--UGGUGGUCGAgCa-GA- -5'
6781 3' -58.1 NC_001875.2 + 113660 0.73 0.390321
Target:  5'- uACGccCGCCGGCACCGCCacaguGGCggCGUCg -3'
miRNA:   3'- -UGCu-GCGGCUGUGGUGG-----UCGa-GCAGa -5'
6781 3' -58.1 NC_001875.2 + 41812 0.73 0.398706
Target:  5'- cACGcGCGCCGGCGCCgcgGCCAGUugcgCGUCc -3'
miRNA:   3'- -UGC-UGCGGCUGUGG---UGGUCGa---GCAGa -5'
6781 3' -58.1 NC_001875.2 + 54750 0.73 0.398706
Target:  5'- gGCGcacCGCCGGCACCGCCAGCg----- -3'
miRNA:   3'- -UGCu--GCGGCUGUGGUGGUCGagcaga -5'
6781 3' -58.1 NC_001875.2 + 69202 0.73 0.415816
Target:  5'- cGCGGCGCCGACgGCCAgUAcGCUUGUUc -3'
miRNA:   3'- -UGCUGCGGCUG-UGGUgGU-CGAGCAGa -5'
6781 3' -58.1 NC_001875.2 + 66063 0.73 0.423661
Target:  5'- cCGACGCCGcGCgcgugcucgcccaGCCGCCGGCUCagGUCg -3'
miRNA:   3'- uGCUGCGGC-UG-------------UGGUGGUCGAG--CAGa -5'
6781 3' -58.1 NC_001875.2 + 67344 0.72 0.43693
Target:  5'- aGCGACGaggagucgggCGGCAacaaccgcgacucguCCACCGGCUCGUCg -3'
miRNA:   3'- -UGCUGCg---------GCUGU---------------GGUGGUCGAGCAGa -5'
6781 3' -58.1 NC_001875.2 + 57892 0.72 0.442304
Target:  5'- --aACGUCGACGCCGuCCAGCUUGUa- -3'
miRNA:   3'- ugcUGCGGCUGUGGU-GGUCGAGCAga -5'
6781 3' -58.1 NC_001875.2 + 70247 0.72 0.442304
Target:  5'- aGCGcCGCCGGCGCC-CgAGC-CGUCg -3'
miRNA:   3'- -UGCuGCGGCUGUGGuGgUCGaGCAGa -5'
6781 3' -58.1 NC_001875.2 + 45914 0.72 0.442304
Target:  5'- aAUGACGCCGACuuUGCuCuGCUCGUCg -3'
miRNA:   3'- -UGCUGCGGCUGugGUG-GuCGAGCAGa -5'
6781 3' -58.1 NC_001875.2 + 14489 0.72 0.460483
Target:  5'- gACGGCcaGCCGGC-CCGCCGGUUCGcCc -3'
miRNA:   3'- -UGCUG--CGGCUGuGGUGGUCGAGCaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.